RNA id: XM_036987381.1


Basic Information

Item Value
RNA id XM_036987381.1
length 5732
RNA type mRNA
GC content 0.47
exon number 7
gene id LOC110531554
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 14311455 ~ 14405052 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCCCAGCCCTTGACTTTTTGGGGGGAGAAATGAAACCGGAAATTGCAAAGCAATACTCACGTTTGGGCTCGAGATACTATCTAATTTCGACTAGCTACTTTCGGTTCATGTCCTTTGCTGATACCACATTCCTGACAAGTTTGTACATATAAAACATATATGTAAACGAGTAAAGGCATACATAAAGTAAGAATTGAACGTGTAAATGTTCATTCATAGTCGTAACATAGGGTTTGTACGTTTACAAATGTAATTTAACGGTTACGTTTCATGTTTCACGGATCGCTTTTCTTACAATCCTAACAATTTCCGTATGATCGATCTACTTGCACCCGCTGCAAAACACTCCTACCTTGGCGCCCGGGACATATTAATTGAATCCCCTCAAGAGTGCCACAAATCCACGGAAGTTGATTTGGGGATGGTCTGGACTGACAAAATCTGGACCAATAATAGACGTCTATTTTTGGGCCAGGGCGGACCATATCTAAAGTTCAAGCAAATATGATCAAAATATAGGAGTCCGAGCGTGCATGTAGTGTTGTCTACGTATTCTCCTCGATCGACTGATTTGCTCTTTCTAATAGGGTCAACGACAAATAATAACCAGGCTACTTTATAATATGGACGTTTTCAAATACCCTGTTTTCTTCGAGTGTCAGACTCTGGACCCACCACAGAAAAATATGATAAAAAGGTACTTTGGAATTAAACGTAAATCCGGTGGCGGAGTTTGTGGACCAGTAGAATCAGTTGGTGACAAAGTCTACAAGATCGCATTTATTGACCAGACAGTCCAGCAGAGGGTACTTCAGAAACCTAATCATGTTTTGGAGATGCCTGGAGGacctctcttcctcactctgAGAGACAGTCAGGAGCCTCCACCCACAACAACCTCCCCAGTCAGCAGTCAGGAGCCTCCACCCACAACAACCTCCCCAGTCAGCAGTCAGGAGCCTCCACCCACAACAACCTCCCCAGTCAGCAGTCAGGAGCCTCCACCCACAACAACCTCCCCAGTCAGTAGTCAGAGTCACCACTCCCTCCCGGTCGAGACATCTCCACCTGGTGGTCAAGAACATGTACTCCATTGTCTGAGCACAGGGAAGCAGGAGAAGATCAGCACCACCTGTCATCTGGGACAGGTCCAGCTCCTTCTTCTAGGTGAAGTGATAGAGAAGGATCTAGGTGAGGTTGTTCCAGGGGTGAAGGTGACACGCGGTGACTCAGCTCAGCTGGTCCTGCATGGCTACGCAAATGAAGTCCAGACAGCCAGAAAGTTGGTTACGGATAAGATCTCTCTGGTGCTGGAgcgggtggtggtggtgtcccCCCACCTCCTGTCCTTCCTGAGGGAGGAGTATGGGAGGCCTGGGAACCTGAGCAGTCTGCTGGGGTTGGGACTCCGTGTGGAGGTAGAGTTGGGGGATACAGAGCTccgtctgttctccctctcctctgggaAACTGGACCAGGCTGAGAAGGATCTGCTGGGAGAGTTTGGGGAGGAGAAGATTGACGTGCCCAACGGTGCCCTCCTGGCTGAACTGAAGTCTAAGCTTGAGACGAAGGTGAAGGAGATGAACCAGAGCAGATGCAGGGTGGTAGCCAGGTATGGTCCTGGGTGTAGAGTGCAGCTGCTGGGCCACATGAAGGAGGTTCAGGAGCTGAGGGAGGAGATTGGGGCCTTTCTGATGGGCAGGTCCAGAGTCGTAAGAGTCGTGAGACACCATCAACAGAATCAGGATGGCGTAGTCAGCGAAGCAGGAACCGGATCGATACAGGAGGAGATGGTCGCAGCCACCAGCTATCGCCTCCGTCTGGGACTGCAGGTAGTTGTTTGTCAAGGTGACATCACCAAGGAACAGGCGGATGCGCTGGTGAACGCAGCCAATGAGGACCTGGATCATGCTGAGGGCGTGGCTGCAGCCCTGAGCCGGGCGGGGGGGCCTGAGGTACAGCGGGCCAGCAGGGATCTGGTTAGGCAGATAGGGAGAGTGCCCACAGGTACAGTGGTAGAGACTACAGGAGGGAATCTGCCTTGTAAGATGCTGCTGCATGCAGTGGGACCAGTAGGGGGCAGCGTAGGTAGGAATGAGCGCCCTTTGCTGGAGAAGACAGTAAAGGCAGTCCTGGATCTGGCAGAGACCATGGAACTCCAGACCTTGGCCATGCCCTGCATCAGCTCGGGGATATTGGGCGTTCCTCTGAAGGTGTGCTCTGAGGCCATAGTCTCTGCAGTGAGGGACTTTGGGAGGAAACAGCACATCCTTACCAAAGTCACTCTGATTGATGTGAGTGGAGAGGCAGTGAAAGCCATGCAGGAGGCCTGTGATAGGCTAttagaggggaagagggagtttCCTGGGTGGGAGGTAGAGTCcagcaccaccactaccactacacatgCTCCTCAGAGAGACACCACTGCTGCCTCCACCAGGGGACCAGTGGCTCCAGAGGTCTGTGTCCAGGTGGAGATCATCCAGGGAACCATAGAGAaacaggagGTGGATGCCCTGGTGTCCCCCATGGTTGGCAGTGACCCTCTCTCCTCCCGTGTTGGTAATGCGTTGTTGGAGGCAGCTGGACCAGGGATGATGACAGCGTTTGTGAGGAAATCAGGGGGACGGACTGCACCTGGTGACAACGTCCTGGTGGAGGGACtgtctggtctcagctctggccGTGTCTTCTTCCTCAGCTGTGCACATTGGGACAACAACCCCCAAGGACCAGCAGTACAGGCTCTGAGGCAGGGTGTGAGGAACATTTTGACCTCTTGTGAGAAGCGGCGCTTCCGTTCCGTTGCCTTCCCTTTAGTTGGAACTGGTGTGGTTCTCCAGTTCCCTGACAATGTGGTAACACAGGTTCTGCTAGAAGAGATCCGTAGGTATGAGCAGAACCGAGCGAGCAGAACCCCCTTCCTTGTCCGCATCATTGTCCATCCAAATGACAGAGATTCTACCAAGGCTTTTCAGACTGCCCAGAATGCTTTGCATCTCAGAGGGTTTGTATTAGGCACTCGACCAGAGCAAGACATCAGGATTGTGCTGCTGGGGAAAACCGGAGGAGGTAAAAGCAGTGCTGGAAACACCATCTTCGGACAAGATGATGTGTTCCTCGTAGACAgttcctccacctcctcaacaCAGAAATGTAAAGCTCATACCAAGAACATCAAAGGGAGAAACATCACCCTGATTGACACACCTGGATTCTTTGACACTGACATCCCTGAAGAGGAGCTGAAACCTAAAATAGTTAAATGTATAACAGAGTGTGCTCCAGGACCGCATGCCTTTCTCATTGTACTGAAAGTGGAACGGTACACAGTCCACGAGAACGAAGCTGTAGCGAAAATCGAGACGTATTTTTCACCAGAGGCCTTCAAATATGCTACAGTCCTCTTCACTCATGGTGACCAGCTCAATGGTTTGACCGTTGAGAAGTTTGTCCAACAGAATGCTGAACTGAACAAGCTTGTGGAGAAATGTGGAGGCCGCTGTCACGTCATCGACAACAAATACTGGAACACCAATCAGCAGGGTCCGTACAGCAACCAGTACCAAGTAGCAGAGTTACTCAACACCATAGAGAAGATGGTGAGAGATAACGGAGGAGGGTTCTACACCAACGAGATGCTCCAAGAGGCAGAGAGATTAATACAAGCAGAGATAGAGGGTCTTAGGAAGGAGTTAAAAGGCCAGATGTCAGAGGAAGAGATGAGAAAACAAGCCAAGAAAAGAGCGAGGAAGAAACTCCTGATCAAATTGTCAGGGATAGCAACAGGTGCAGTGATAGGAGCTCTATTTGGCGTAATACTGGCGATAATGATTCCACTCTCACTCGCTACACAACCATTGATCAATTTAGTCAAAAGTCATATAGCAGCTTCAATGACAATAGGGCCAGCAGCTGTGGCGGAGGTAGCAGGACCAGTACTTACACTAGAGTCAGGGGTGGGAGTGGGTTCAGGGATAGGTGCAGGGGTAGGCATAGCTGCAGGAGTTGTCGTTGGgatggcagcagcagcaggaggagtaAGAGGAGGGATAGTAGGAGCTACTGCAGCAGAGGAGGCAGAGACAGTACAGGAGGCAGCAGAGGAAGCAGCCAATGCTGTCTTCGAGGATGCTAAGCGTCTTTATCGCAAAGCAGAAAACCTTTTCATACCTTTCAATAACTCTAAATAGATGATATATACCTGAAACCATTGATTGATGGCAACGTGTGTTTCAACATCTGACTAATAACTATGTAGACACCAGTCAGTTCTATACCACTGTAGAATAGCTGCTTGTCCAACATAGCTGCTtgtcaaaatgtttaaaaatatatatattttgcatctATTTTTCATTTTTATAGTTTTGTAAAAATCAAGGGATATATATTGCAAATAGTAATGTGGCCGTCCTGAAAATGTGTCAGCTGGGTATTGACATTCAAAAGGCTGATTTTATAGTTCGAGGAACATAATTGAATTTAATATGATGTTTTTTCCATGTCGGATCGTGTtcgcatatgaagtggctataTGTTGGGAGTAAAAGTGAAAATTTCAAACAATACCTATAGAGTTATATGGTTTgaaccttagaatgtcttagaaatcaaaacggtaatgggctgcatgatgcgactatagGCAATTGATGATTTTAGAAAGTCGCAAAAAAACTTGGCGCTTTGTTCCTTGCCTGATCACATTTTCTCCCATCAGACTAATCTCAGTTTAATCTGTCTTTACCCAAATGTAAAATGACTTTAGGAGGGGGGAAATAAATGTAATCTGTATGCACTCGAATAGCGAATGGGGGCCACTTCCTGCTATTCCGGTTAtttcacacacacaacaaccactGTTTGAGGGGAATGCTGCCTCTTGCTGCACGACAGGTGATATTCTGCCTAAACTCTGAATactatgggctctccaaccctgttcctgcagctacccagtgggctctccaacccttttCCTGCAGCTACCCGGTGCTTAATTTGGGGAACCAAGTTAAATCTGTTAAGAACattgatagtaacatgttttAACAACGAAATATATTTAATTAGACTGTTTACAGCCCCTCTCTGTGCGTGCTCAAGAACGGAAtgatggggagaggggaagagacggaAACGcacggtggtgagatattctgtagctaatCGTAATGCGTAAGCCTATTAATCATGAAGaaaggggaaaaaaacgattaCTAGGATATTCAAAATCCTGTACACATTCCCTTTAATTGTTGGCTAACTCTGAATTCGTATAGGATAGACCAGTTATGTCCATCTGTTTTAAAATGCTATTCTGTCATGCATAATATGTGGTAGGCTATGTATAACAGCACAAACATTATTTTAATTCACGTTTCTTTTTCAGGCTTGGGCTCAGATATAGGTTTATATGTATGCATAAGCTCTAATAGCATAAGGTTGTTGTTTAATTCGTCATCACCTTAGATAGCGCTGTCCATTTCattgtgttaggctttgaaacaacatccatgTTTTCCATTCAGTTTCAACCTGTcattgaacttctttcttcaaagtGATCAATCACAGTGAGATTAGTTTTTCAAACATGTGGGATTCTGTGTTTTACATTATAGACAATACcatatatatgattaaatattatcTGATGTTGGCTGTGTGAGGTATCTGCATTTGTGCACTTGAGCATCATCATGAGATAAAACAACTGCTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU882233 lncRNA downstream 9008 14340260 ~ 14340725 (-) True G774285
TU882229 lncRNA downstream 12929 14336519 ~ 14336804 (-) True G774281
TU882174 lncRNA downstream 17831 14311460 ~ 14331902 (-) False LOC110531554
TU882109 lncRNA downstream 226542 14114285 ~ 14123191 (-) True G774181
TU882087 lncRNA downstream 246917 14075965 ~ 14102816 (-) True G774159
TU882270 lncRNA upstream 3229 14408277 ~ 14408578 (-) True G774314
TU882272 lncRNA upstream 6298 14411346 ~ 14411554 (-) True G774316
TU882273 lncRNA upstream 7590 14412638 ~ 14412914 (-) True G774317
TU882287 lncRNA upstream 27375 14432423 ~ 14432636 (-) True G774331
TU882288 lncRNA upstream 29294 14434342 ~ 14434580 (-) True G774332
XM_036987374.1 mRNA downstream 38586 14294361 ~ 14311147 (-) False LOC110531552
XM_036987375.1 mRNA downstream 38586 14294361 ~ 14311147 (-) True LOC110531552
XM_021614784.2 mRNA downstream 39006 14294361 ~ 14310727 (-) False LOC110531552
XM_036987383.1 mRNA upstream 37435 14442483 ~ 14446637 (-) False LOC110531560
XR_005053180.1 mRNA upstream 37488 14442536 ~ 14446637 (-) False LOC110531560
XM_036987384.1 mRNA upstream 37927 14442975 ~ 14446638 (-) False LOC110531560
XM_036987385.1 mRNA upstream 37927 14442975 ~ 14446639 (-) True LOC110531560
XM_021614797.2 mRNA upstream 44808 14449856 ~ 14458737 (-) True LOC110531561
TU882202 other downstream 95576 14249401 ~ 14254157 (-) True LOC118966145
TU881137 other downstream 362151 13980328 ~ 13987582 (-) True LOC110531538
TU880908 other downstream 650405 13697179 ~ 13699328 (-) True G773168
TU880902 other downstream 757645 13590253 ~ 13592088 (-) True G773163
TU880579 other downstream 1353323 12994269 ~ 12996410 (-) True G772877
TU882399 other upstream 319006 14724054 ~ 14724522 (-) True G774427
TU882572 other upstream 833010 15238058 ~ 15253973 (-) True G774562
TU882761 other upstream 947259 15352307 ~ 15361319 (-) True G774702
TU883038 other upstream 1220154 15625202 ~ 15625920 (-) True G774954
TU883145 other upstream 1377309 15782357 ~ 15787606 (-) False LOC110531603

Expression Profile