RNA id: XM_036987383.1


Basic Information

Item Value
RNA id XM_036987383.1
length 2009
RNA type mRNA
GC content 0.51
exon number 4
gene id LOC110531560
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 14442483 ~ 14446639 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCAGACTTCCTTCCTGACTTGTGGTGATAGCATGTATTTTGTGTTTTCAGACTGACAGAAGGGGAacaagaaagaggagagaaaaaggagtCCTGTGTAGACGGCCGGACGGACAAGAGGTCAGTCGGACAGGTGGACAGACATACAGtcagataaacagacagacagacaggcggacagACACTTCTTGTGGATTTGAGAAGATCTAGGTTAAAAGGAGAATTATTCCATCTCATAAAGTGGATTATCCAAAAGTCCAGAAAATGGCGTCAGACCTCTCCATCTCcgctccctccctgctcccctccacccctgctcttgtctcctcctcccctcctctctccatctcacaccAGATCGGTATCTCCATTCTGGTCCTGGCCTTTGTCTTTGGTTTCCCAGGCAACCTGTTCGTGGTGTGGTCGGTGCTGTGCCGTGTGAGGCATCGCTCTGTCACGTGCCTGCTCGTCTTAAACCTCGCCGCGGCCGACGCCCTGGTGCTGCTAAGCGCCCCGCTCTTCCTGCACTTCCTGGCAGGCAGGCGAGGCTGGGAGTTCGGGGCGGTGGCCTGTAAGACGGTACACTACCTGTGCTGCGTCAACATGAATGTCTCCATCTACCTGATCTGCTTGATGAGCATGGATCGCTGGCTGGCCGTGGCGAGGCCCTTCCTGTCACAGAGGATGAGGACCAAGAAAACCCTGATGGCCGTTCTGCTGGCTATCTGGGTGCTGGCATTCGTCTTAGCTCTGCCCATGCCCTTCTATCGCagtaaCCTGAAGCCCTTCCTTCACAAGAACATCTCCATGAGCATCTGCATGCCGTACCACTGGGGAAGTGTGGGTCACCAGGTGTTCCAGTACCTATTCGAGACCGTCCTGGGCTTCTTCCTCCCCTTCACCTTCATCATCGTCTGCTACACCTCCGTCATCTGCCGGCTACGCAGCGTCATGTTCCAGCGCAAGGGACGAGGAAACCGtctcatcctcctcatcatcggCGCCTTCGCTCTCTTCTGGCTGCCCTACCACCTGGTCAACATCTTACAGgtgATTGGTCTGCTGGGTAGCAACGGCACTCTCTCCAATGCTGCTGTATTGGCCCGTCCCAACGTCACGGCGTTCGCCTTCCTGAGCAGCAGTGTGAACCCTGTGCTGTATGTGTTCGCCGGCAGCTCCCACATCCGCCAGGCCGGCCTCAGCTTCATGGCCAAGCTGTTCGAGGGCACCAACTCCGAGGGAGGTACCTCCGCCTCCTTCTCCCGCAGCACGAGGTGCAGCCGGAGTGGTTCCACAGCCCCGGACGAGAGCTCCGCTCTGCGCTCGCTGACACTCAAGCTGGGGTGGTTGGGGAAGGAAAAGGATGGGGGTGGGGATAGTGGAGTGGAGCTGCGTGGAGTTGAGGTCAAGGTTAACTCCAAGCAGGAGCTCAAGACTTTGACATCCAGTGATCAGTCAGAGTAGTATTTTTTGTAAACTTTTTGCGGCCTACTGTAGTACTCCTAGATTATTATTCGTATTGAATGTATTTCATGAACAGATTTGTGATATATGTACATCATAGCAAGTGTGTCTGTGAGGTTGCCTTCATGCAATTTCTGAATGAAAATATTATACCATTAGTTAATAAAGTTTTCACATGTTGACAAATCGAGTCAGATTAGCGATTGGAGGGGAAGGAACGGTTCTAGACTCTGACATGCGAGGTCTAGCCAAATGACGTCAGTGACTGGAGCGATGTTTGGAAACTCACATTTCCATAATGACCTCACTAATGCAATTGCGGTTAATTATTAGAAAATGTTCTGGGTAGGTGATGCAATGGAGACCAGTAGCCGATTTTAGTTGCACCATTATTCAGATTTGTGATATATCTGCTTCATAGGAAGTGTGTCTGTGAGGCTGCCTTCATGCAATTTCTGAATTAAAATATTATACCATTAGTTAATAAAGTTTTCACATATTGACAAATCGAGTCAGATTAGCGATTTCTTCAAGGAAGAGGGGAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU882288 lncRNA downstream 7903 14434342 ~ 14434580 (-) True G774332
TU882287 lncRNA downstream 9847 14432423 ~ 14432636 (-) True G774331
TU882273 lncRNA downstream 29569 14412638 ~ 14412914 (-) True G774317
TU882272 lncRNA downstream 30929 14411346 ~ 14411554 (-) True G774316
TU882270 lncRNA downstream 33905 14408277 ~ 14408578 (-) True G774314
TU882294 lncRNA upstream 12777 14459414 ~ 14459613 (-) True G774338
TU882300 lncRNA upstream 21289 14467926 ~ 14468220 (-) True G774344
TU882301 lncRNA upstream 22001 14468638 ~ 14473995 (-) True G774345
TU882305 lncRNA upstream 29891 14476528 ~ 14476767 (-) True G774348
TU882308 lncRNA upstream 35304 14481941 ~ 14482250 (-) True G774351
XM_036987380.1 mRNA downstream 37431 14349733 ~ 14405052 (-) False LOC110531554
XM_021614793.2 mRNA downstream 37431 14397590 ~ 14405052 (-) False LOC110531554
XM_036987381.1 mRNA downstream 37435 14349733 ~ 14405048 (-) False LOC110531554
XM_036987379.1 mRNA downstream 37615 14311455 ~ 14404868 (-) False LOC110531554
XM_036987374.1 mRNA downstream 131336 14294361 ~ 14311147 (-) False LOC110531552
XM_021614797.2 mRNA upstream 3219 14449856 ~ 14458737 (-) True LOC110531561
XM_036987387.1 mRNA upstream 38103 14484740 ~ 14508334 (-) False LOC110532933
LOC110531562 mRNA upstream 42328 14488965 ~ 14490565 (-) True LOC110531562
XM_036987386.1 mRNA upstream 44112 14490749 ~ 14508334 (-) False LOC110532933
XM_021614803.2 mRNA upstream 62403 14509040 ~ 14529861 (-) False LOC110531564
TU882202 other downstream 188326 14249401 ~ 14254157 (-) True LOC118966145
TU881137 other downstream 454901 13980328 ~ 13987582 (-) True LOC110531538
TU880908 other downstream 743155 13697179 ~ 13699328 (-) True G773168
TU880902 other downstream 850395 13590253 ~ 13592088 (-) True G773163
TU880579 other downstream 1446073 12994269 ~ 12996410 (-) True G772877
TU882399 other upstream 277417 14724054 ~ 14724522 (-) True G774427
TU882572 other upstream 791421 15238058 ~ 15253973 (-) True G774562
TU882761 other upstream 905670 15352307 ~ 15361319 (-) True G774702
TU883038 other upstream 1178565 15625202 ~ 15625920 (-) True G774954
TU883145 other upstream 1335720 15782357 ~ 15787606 (-) False LOC110531603

Expression Profile