RNA id: XM_021614801.2


Basic Information

Item Value
RNA id XM_021614801.2
length 4868
RNA type mRNA
GC content 0.49
exon number 15
gene id LOC110531564
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 14509040 ~ 14531504 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCCTGCCTCAACACCGTGCCCCTTCCCCGGCTGGGGTGATGTCATAGCGCCAGGGCTGAGGCTGTGGATTGTGGGAGAATTCGGACAACAGCCATTTTCGGGTAGCGACTGTCATCCTTGGAACACACTTCTCAAACTGTGAGAGAACGTACCAGTCCCGTACTATCTTTAAAACAAATTCTAGGGATGGATAGAACGATGCCGACTCACGGCAAATAGTGTTCCTGTATTTAGAGCGCTGCTCCGGTTCAAGTTACGGAAGACGAGAACATTGACTAGGCTAATTCGTGGCAGGCTCGAATTCATTAGCTAGCCAGCCATGCTAGCATAATTGGTTACAATGTATTGCTTGGAATTTGCTCGCTTTTAGACGGCAGCGACGTTATACAACGGGATTAAAGCCAGTGGTGTGTCGTGGGTTTATTTTTATAGTGCAGCAGACCGAGTAACGTGTCATCAGGATTTAACCGGCGGGCggactggggagagagaagtgtGTGTGAACTCAGGTTATGTCCACCATGGTGTACCCACGCAGCGAGGAGGCCCTGGAGCGCCTGACCCAGGATGAGATCGTGCTCAACACAAAGACTGTGATGCAGGGCCTGGAGACACTCAGAGGGGAGCATGCCCAGCTCCTCACGTCCCTGCTGGACTGCACCCAGCCACCTGCTGCCCAGGAGAAGTCAGGCCTGCTGCGGAAGAGCCTGGAGGCCATAGATTTAGGCCTGGGAGAGGCACAGgtGATCATTGCCCTGTCGGGTCACCTGAGTGCTGTGGAGTCAGAGAAACAGAAGCTAAGAGCCCAGGTCAGACGACTGTGTCAGGAGAACCAGTGGTTAAGAGATGAGCTAGCAGGAACACAGcacAAGCTGCAGCGTAGTGAGCAGAGTGTTGCCCAgctggaggaagagaagaagcaCCTGGAGTTCATGAACAAGATCAAGAAGTTTGACGACGACGTGTCACAGTCTGAGGAGAAGGCTGCAGGGGAGACGTCTAAAGACAGCCTGGACGACCTGTTCCCCAACGATGACGACCAGGGACAGGcccagcccagcGGAGAGGTGGCGGCCCAGCAGGGTGGCTATGAGATCCCGGCCCGCCTGAGGACTCTCCACAACCTGGTGATCCAGTACGCCTCCCAGGGGAGGTACGAGGTGGCCGTGCCCCTCTGCAAACAGGCCCTGGAGGACCTGGAGAAGACTTCCGGACACGACCACCCTGACGTGGCCACCATGCTCAACATCCTGGCCCTGgtctacagGGACCAGAACAAGTACAAAGAGGCAGCCCACCTGCTGAACGATGCCCTGGCCATCAGAGAGAAGACCCTGGGGAAGGACCACCCTGCGGTAGCCGCCACTCTCAACAACCTGGCTGTGCTCTACGGGAAGAGGGGCAAGTACAAGGAGGCTGAGCCCCTCTGTAAGAGAGCCCTGGAGATTAGAGAGAAGGTCCTGGGGAAGTACCACCCTGACGTGGCCAAGCAGCTGAACAACCTGGCCCTGCTGTGTCAGAACCAGGGAAAGTACGAGGAGGTGGAGTATTACTACAGACAAGccctggagatctaccagtccaaacTGGGGGCTGACGACCCCAACGTAGCCAAGACCAAGAACAAcctgGCTACATGCTACCTCAAACAGGGGAAGTTCAAGGATGCTGAGTCCCTGTACAAAGAGATCCTAACCAGAGCACATGAGAAGGAGTTTGGATCAGTCAACAATGACAACAAGCCAATCTGGATGCatgcggaggagagagaggagagcaagGGGAAGAGGAAGGAAGCTAGTCCCTGTGTAGAGTATGGGAGCTGGTACAAGGCCTGCAAAGTTGACAGTCCTACTGTCAATACCACCCTGAAGAGCCTGGGGGCGCTGTACCGCAGACAGGGTAAATTACAGGCAGCTGAGACACTGGAGGAGTGTTCTACCAAGACACGCAAGCAGGGTATAGATGCCATTAACCAGAGTAAGGTGGTGGAGCTCCTGAAGGATGGGGCCCCAGGAGGGGGTGAGCGACGGCAGAGCCGGGAGGGTCTCAACGGGCCCCAGCGGGGGGACTGTGAGGGGGACGACGGAGCAGAGTGGAACGGGGAAGGTCACGGTTCTTTGCGTCGGAGCGGCTCCTTTGGGAAGATCCGTGAAGCGCTGCGTAGGAGCAGTGAGATGCTGGTGAAGAAACTACAGGGCAGTGGCCCCCAGGAGCCCCGCAACCCAGGGATGAAGAGAGCCAGCTCCCTCAACTTCCTCAACAAGAGTGCAGAAGACCCCTCACAGgacGCCAACACCGGCCTATCAGAATGCAGAGGACTGAGTGCCAGCAATGTGGACTTGTCAAGACGCAGCTCCCTGATTGGTTAAACAGAGACAGGAGGCGGGACCAGGAGGAGGAAGGTCCAATGACGGGACCAGGAGGAGGAAAGCCCAATGAGGAGAGGCAGTTTGCCGCCCAAAGCGATCAAAACACTTCCGATCCAACACTCACATTCAAGACATATTTTCTAAAGAAACAAGAAAAAGCATTGCAAAAAAACCTGACTTGACGCTTTTAGTGACTCAGACGTCTCTGTGTCTGCTTTACTGTATTCTTCGCTGGCATCTATCAAACAAGTAGAGAACATCCTATTTAAACGGCATGCTGCTTACTAGAAGGTGGAATTTTTGCACTAGACACTCATCATGGTGAGTCTGAGGCATAGCATCATGACAGAATCCATATTGTTATCGCAGTGTGACGAATTTCTATCTTAACCCGCACACTCTCATGCTGACACTCAACCTTAGGTAGGCTAGTTCTATTCTGATTTCTATCTTAGAGAAGTGTAACCGACGTCAATGTGCCGCTAACGGTTTAGCTTCCTCCACCGTCCCTGTCTCCATCCTTGGCTCGAACCAGTGATCCTCTGTTTTGCAACACACGTGACCGCCTTCCATGACAACGCGGGAACACGATTGAGCTATACAGAAGGTACCAATCGGTTAGCTCCATCGGCAACATTTCAAGCTAGCTGCGGAGCATTACGGTACATTCCTAACTCTGTTACACAAGCATCACACTCAGCTCACTAGTGACATGATTACTGAAAATGCTAACAACCCATTCAATGGAAATCACAGTGAAGAAAGCCATATAAATCATATACGTTTTTAAGACGAGGTATGAACTACAGCTGTTAGAAACTTCAGCGATGTAAAAGACAGATGGTACACAATCTTTTTGGGATGTCAAATAAATCATTGTATTTAAACATCATCTGGGAGAAAAAAACAGCGCTGACCAGTTTAACCTCTCCTTTTTGCTATCTGAATGGTTATGTATATACAGGTTTAAGTTATTTTCTATTTCTTTCTTTGTATATAGCGCACAGACAGGTTCTTGTTTAAACTGGTTAGAGGTTAGGAGAACCTCTGATTTGGAGACAGACGCTGGAAGAGGACAGTCAGAAAAGAGTGAAGAGAGAAACGGGGAGAATATCGGCACTTAATGGGTGTCCTAACTTCTAGTCCAATTTTCACCCACTGATATGAAGTGAAAATTTGACAAAATGGAGGTTAGAATTTCCCCCTGAATCTATAGCCTGATCTGGTCAGATATGTTTGTGCTCTAATCAACTACTGTTCTGTTTGTTGCCTTGTCAGACAATTATGAACATGACAGATAAGAGTTGGCTAAAGGTCAAACATATCAGAGACCAGGTTcgtattcattaggcactaaaTAGAAGAAAACGTactgaaacagggaggaactACCTGGATTTTTACAATAAGAAACTCGTTttcattttctgttgcaaaaagGTTTTgtacggtgtgcactaatgaatggCGAGACCAGGCTTACTTAGTTCATCTCAGACCTGGGGAATATACTGGAAATGCTGACGTGACAAGCAGTACCAGTGTATCTCAGTCAGTGTGCAGCCTGTTAGCAAGGCGTGGTACAAATGCCTGTTTAACTCCACCACTGAAGTCCCATTTGTCTTACGTGATCCGGTGGTGTTGGGACTGAAAAACACGTTATTAGCCTGACTGATGCTGTGGAGGTGAACGTGCTCCTATGTTGAGTGTTGATTTTATCAAATGCATGGtcacatgtctaccacagcacAACGTTTCTCCCCCAGCCAAATATGATTAGATCTCTACATAGTTGTAATGCCCTCGTATTAGTTAAGATGATACAATACAGTGCATCTGTTTCTGTAAGAGGGAAGCATTAGGCATCCCATATGTACCGTATCATAGATATCTGTCCTTGGTTGGCCTTTACTGAATAATGAGAGCATGATATGTCCTTATCTTTTTATATACAACAGTGATCCTTTATTATAACTTGATGTTGTTTGGAAATAATCTGATTGGTTTACAGAACTTATATCTGATCTAACCAATGACAGTCCTTCACCAAATGTTCTCATCATTTATGTCTTATTCTTGTCTGTGACTGGCTCCAACCTCGATTGACGATGTGCGGGGTATTGTTGTTGAACTCTGAATGATGATTTGAATGTTGGGTTTTACTTTGATGAGGGGCAGGGAGGGAAGAGATTGACtgtgtactgtgttgtgttggcTATTTTAAGTGTCTGGTTTGTGAGTTAGGAGTCCCAAGACTGATACCAAGAGTCTTGGCCAACAGAATGTATATTAGAATATGTCCTAATGAGTTTCACCTCCTGATTGTTGCTCAGTGCAATGTAAAGTGGGAATGGGATGGATTTTTTACTGGGGAAACAGATGGAAGGAAAGCTtaagtatgtgacaaatacaggcTAGAAGGGCTGAGGAGGAGAACACTGATGATGAATGATAACGGGGGAAATAGAAGTATGAAGTGCTGTTCGGTGAGAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU882189 lncRNA downstream 21065 14486882 ~ 14487975 (-) True G774244
TU882187 lncRNA downstream 23060 14484776 ~ 14485980 (-) True LOC110532933
TU882308 lncRNA downstream 26790 14481941 ~ 14482250 (-) True G774351
TU882305 lncRNA downstream 32273 14476528 ~ 14476767 (-) True G774348
TU882301 lncRNA downstream 35045 14468638 ~ 14473995 (-) True G774345
TU882259 lncRNA upstream 539 14532037 ~ 14535649 (-) False LOC110531563
TU882256 lncRNA upstream 669 14532167 ~ 14534738 (-) False LOC110531563
TU882257 lncRNA upstream 669 14532167 ~ 14534738 (-) False LOC110531563
TU882258 lncRNA upstream 669 14532167 ~ 14534738 (-) True LOC110531563
TU882342 lncRNA upstream 65177 14596675 ~ 14599870 (-) True G774383
XM_036987387.1 mRNA downstream 706 14484740 ~ 14508334 (-) False LOC110532933
XM_036987386.1 mRNA downstream 706 14490749 ~ 14508334 (-) False LOC110532933
LOC110531562 mRNA downstream 18475 14488965 ~ 14490565 (-) True LOC110531562
XM_021614797.2 mRNA downstream 50303 14449856 ~ 14458737 (-) True LOC110531561
XM_036987385.1 mRNA downstream 62401 14442975 ~ 14446639 (-) True LOC110531560
XM_036987389.1 mRNA upstream 496 14531994 ~ 14626814 (-) False LOC110531563
XM_036987390.1 mRNA upstream 496 14531994 ~ 14626815 (-) False LOC110531563
XM_021614854.2 mRNA upstream 102427 14633925 ~ 14646732 (-) False LOC110531585
XM_021614855.2 mRNA upstream 102453 14633951 ~ 14646754 (-) True LOC110531585
XM_021614853.2 mRNA upstream 156436 14687934 ~ 14692367 (-) True LOC110531584
TU882202 other downstream 254883 14249401 ~ 14254157 (-) True LOC118966145
TU881137 other downstream 521458 13980328 ~ 13987582 (-) True LOC110531538
TU880908 other downstream 809712 13697179 ~ 13699328 (-) True G773168
TU880902 other downstream 916952 13590253 ~ 13592088 (-) True G773163
TU880579 other downstream 1512630 12994269 ~ 12996410 (-) True G772877
TU882399 other upstream 192556 14724054 ~ 14724522 (-) True G774427
TU882572 other upstream 706560 15238058 ~ 15253973 (-) True G774562
TU882761 other upstream 820809 15352307 ~ 15361319 (-) True G774702
TU883038 other upstream 1093704 15625202 ~ 15625920 (-) True G774954
TU883145 other upstream 1250859 15782357 ~ 15787606 (-) False LOC110531603

Expression Profile