RNA id: TU882259


Basic Information

Item Value
RNA id TU882259
length 3357
lncRNA type sense_over
GC content 0.41
exon number 3
gene id LOC110531563
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 14531994 ~ 14626815 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCCCTCTCTcccagtgtggtgtgtgtatgaggGGAACACAGCACAAGATAACTAACTGCCTTTCAACTAACCGTAACGATGAGGTGCAACCCCACAAATAACTCCCATTATGACCCCTGACCCTTTAACCCCGACCGGTGTCTCTTATCACATTGAACCTGCCAACGGTCAATCCGTGCTCTAACCCAGACCTGCATGCTGTAAACTCCACCACCCACGTGCCAGTTATAACAAGAACATCATGTTGTGTTAACAGTAATGACATGGTTATTATGGGCTATGGAGGGGAACTGTGCATGACAAATGGAACAAACAGACAACACGTACAGTAGCAATGCTTTTCCTGCTCCCAAAATACAAGAAAAGGCTTTTTTCTCACCAGTGATATACGTTGATATGATATGCATCTGAAGAGTAAAAAATGGAAACGTTCCGTTTTGATGTTGTAACAACATTGTAGCTTTCTGTGAACAGCACAGTCCAGTCCTCCAAATTCAGAGCTCACTGTTTGTCCAAACTCTACTGCTGTCTGTAAGGCTTGTCCCTTTATCAATCAGTTATTGTGGTCGGCATTGTTCTCTTGATTTGATTAAATGACGATGTGTTCTAAGAAACACACTAGTCCTCTTGGCATCTAGAATGAACGCTGACCAGTCGTGAGTAACTTAGCGCTGGGTCACCTGTAGCCCTAACCCCACCTGTGCACTGTAAGTATTATGACCAATGTCAAGTATTACAATGACATTGTGTCCAATTTTGCTGTTATTATTATGATTTTCATGGTAACTTGGAGGTAGGAGGTTTCTCAGCAGTGACGTCAACATCTCGTGTAACTAACTCAATATCTGTCCCTGTtctcttttggggggggggggggctcttacAAATGAAGGGTTTTGCACCAAGGCCTTCAAACTCACTGAGAATGAATACACAGCTATGCATGTTCCACAAATAAGTCTGAATGATAGCATGCAAAGATTTCACAGTACGAGGATGCATTTCCAGCAGTCATTGGTGATATCCCCTGAACCTCATTTGAATGCAGATAATATTCATTGATTGCGTCTTCGTTTATTTGATCTCACTGTCGTCAGAAGCTTCATTATTTAGGAACACTCCATTTTTGTAAGTTTTAAACCCATTTTATCAGTGAATGTCTCGTTTAAttcgagagagaaaaaaactgaTGGCAGGAGAGATTAGCGGACTGTTAATTTACAAATGAAACACTTTTTATAGGCCAGAACCAGCTGTTACTTCACTAGAGCATTTTCTGTTGTTCTttgaacacaaacacaccataaTAATCTCTCTCCAAACTCCATAGTCAGTTGACCTTGTAACTTTGTAGCCTGTGAGCTTGGATACTTTGTGCAACTTCCCTTGTGAGTACCAAAGAGAGATATGGCCAGGGCAGTGGCACTATTCAAAGCAGACCATCAAACTCTGCTGCTCTTATTACGTGTCCCTGCCCACCAGCCACGGGCTAGACCCAGACACATATCTTCATCTGGACTTGGACCCATCTTTTAACTGACTGTATCTATGTATGTTATGTACGTGGTTGTATCTATGATGTGCAGATGTGTCtccttaaccacagatctaggatcagattaccctgCCCTCCAGTTCTAACCATAACCATTAGGGGGAGTTAAAACTACCTGACCCTGAATCAGTCGTTATGGGCGACATCTACTGCCAGAGCTCCAACTGCTCTTTGCCTTGCAACGTGTTATTAGCATCATAAGGAGTGTAAGATATGATTCTATTTGAACTGCTTTGTTTTCATAGGGGAATCGGAATTATTCAACGAACGGGACAGACAAAAataatcactgccaaaaatgTCTGTTACATGGATATTACAGCCAAGCTGACGAGAGGGTGTAGATAGATATGTGttcagtgtttttggtgacaacaacaaaacaaaacttTAAATCATGATTCTTGTTCCAAAATAATGTATTTCAATGTTAGAAAAAGATGATGTTACCAAGAAACATTCCACTgttttactctctctcctctccccctgttcaCAGTCTCTGTTCACAGTCTCTGTTCACAGTTCAGTCCCTGTTCACAGTCTCTGTTCACAGTTCAGTCTCTGTTCACAGTTCAGTCTCTGTTCACAGTTCAGTCTCTGTTCACAGTTCAGTCCCCTGTCTTTCACCGGTCTCACCGTTGAcatgttgtttgttgtttttcctACCTTCTCTAGCTAGGCCTATTCTTCCTGTGTGACTGTTGTCTCTAACTTGACCTGCTGTGTGTTAacctgtgtctctagctgtactgacctgtgtctctagctgtactgacctgtgtctctagctgtactGATCTGTGGTTGCTGTGATGGTCTTCATGACTAACGTATAGGGACAGGGTTGTGACTAAAGGGAGTATAGTCTACGATCGGAAgttacttttcgtagcaggttaggagaaaaTTTGagctaatcctaaccttaacctaagtATCCTAATCTGCCactttaattatcctaacctgcttcttgtttctcctaacctgctacgaaaaagtaACTTCCGGTCATAGCTGTACTCCCTCCAGTCAGAACCTAGGGACAGCAGTTATTCCTAACCATGTGACTTAGaacaactctgggccctggttatagTCTATACCAGAGGCGGAAGAGGAAGCAAGACATCTCGCTCCCTCATTTTTTTCTGGTTCATATACAGTCAATtaactaagtagaccagacccagctgctatcaCATAAGATATCTTAATTTATCCACCGTCTTTGGTCTAAACCTATAACCAGGGCCCAGACTTCCTGTTCAGGTCACATGATCCTGAAAAACACCTGTCCCTAGTGAAGGGAAGAACAATATGATCTATTAATAAATCCCTTTAATTATCAAtaatctccttcctctcctctatcaTCACAATGTGTTTCAGAACAAATGGAGTGAGAGGTCTAGAACAAACCGTAAGATCTAGAGTCTCTGTCAGGATTCCACAACCTTTGCTTCTAATAGAACCCATTTGAAAGGATCTCCCTGCTTGTAACATAGCAGCCTATCACAGAAGGGAATCAGTTTTTGTGTAACACTGCATAGACCATAGTTATGCTTTGTAGCTAGTAGTTTGAGGGGAGGATTCTAACGCTTGTGGATTTGGAGAGTATTTTTGCACATGCCATTGTTTCTTCAGCAGCTTTTTTTGCCTTTTGCCTATAAACAATAATAATGCTTGTACATACAAAACAAATGTACTTCTGTAATGTATCTTAgtccttgtttttttatttgaaatcTTTTGTAGTACTGCTTTTTTATGTTTATGTTGTGTGATGGAAAAGTGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU882189 lncRNA downstream 44062 14486882 ~ 14487975 (-) True G774244
TU882187 lncRNA downstream 46057 14484776 ~ 14485980 (-) True LOC110532933
TU882308 lncRNA downstream 49787 14481941 ~ 14482250 (-) True G774351
TU882305 lncRNA downstream 55270 14476528 ~ 14476767 (-) True G774348
TU882301 lncRNA downstream 58042 14468638 ~ 14473995 (-) True G774345
TU882342 lncRNA upstream 61026 14596675 ~ 14599870 (-) True G774383
TU882355 lncRNA upstream 94884 14630533 ~ 14630845 (-) True G774393
TU882380 lncRNA upstream 164651 14700300 ~ 14700618 (-) True G774416
TU882393 lncRNA upstream 174375 14710024 ~ 14710230 (-) True G774424
TU882387 lncRNA upstream 180856 14716505 ~ 14718146 (-) True G774419
XM_036987388.1 mRNA downstream 533 14509040 ~ 14531504 (-) True LOC110531564
XM_021614802.2 mRNA downstream 535 14509040 ~ 14531502 (-) False LOC110531564
XM_021614801.2 mRNA downstream 539 14509040 ~ 14531498 (-) False LOC110531564
XM_021614799.2 mRNA downstream 540 14509040 ~ 14531497 (-) False LOC110531564
XM_021614803.2 mRNA downstream 2176 14509040 ~ 14529861 (-) False LOC110531564
XM_021614854.2 mRNA upstream 98276 14633925 ~ 14646732 (-) False LOC110531585
XM_021614855.2 mRNA upstream 98302 14633951 ~ 14646754 (-) True LOC110531585
XM_021614853.2 mRNA upstream 152285 14687934 ~ 14692367 (-) True LOC110531584
XM_021614849.2 mRNA upstream 257027 14792676 ~ 14803212 (-) True LOC110531581
LOC118966000 mRNA upstream 482382 15018031 ~ 15035380 (-) True LOC118966000
TU882202 other downstream 277880 14249401 ~ 14254157 (-) True LOC118966145
TU881137 other downstream 544455 13980328 ~ 13987582 (-) True LOC110531538
TU880908 other downstream 832709 13697179 ~ 13699328 (-) True G773168
TU880902 other downstream 939949 13590253 ~ 13592088 (-) True G773163
TU880579 other downstream 1535627 12994269 ~ 12996410 (-) True G772877
TU882399 other upstream 188405 14724054 ~ 14724522 (-) True G774427
TU882572 other upstream 702409 15238058 ~ 15253973 (-) True G774562
TU882761 other upstream 816658 15352307 ~ 15361319 (-) True G774702
TU883038 other upstream 1089553 15625202 ~ 15625920 (-) True G774954
TU883145 other upstream 1246708 15782357 ~ 15787606 (-) False LOC110531603

Expression Profile