RNA id: XM_021614849.2


Basic Information

Item Value
RNA id XM_021614849.2
length 2848
RNA type mRNA
GC content 0.38
exon number 9
gene id LOC110531581
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 14792676 ~ 14803212 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTATTCCATAACAGTTGTTGTTGTGcactgccagtgtgtgtgtggttgagtgtgtgagtgtttgtgggatttaaatgagtgagtgtgtgtgatgaGGGCCTTCTTCCTCTTCTGGTCCCCACTCTGAAAGAGAACTTAGAGCTGTGATGATGTCTGGTGAAATCATCTACTCCGATGTTACATTCACTCGGCATCAGAACCAAGATACTGGAGCAGAAAGTGCAGTTTCTAATGGAGTAGCCGAACGTGAAGAGGATATCACATACTCTGAGGTTAAAAGACCGGGAGGTAGAGCTAGTGAGCAGAAGGATCCTGGGAAAGGAAGGGACCATGGCAATAGTGACCCCACTCCCCCAGTGGGGTCAAAGGCTACAATCCCTGAGGGAGGGTATGGGAGAGTTCCCGTGGTGACCctgatgtgtctctgtgttctactGCTGGGCCTGGCGATCACTCTGGGAATCCTCTATGCTTCCAACATGACTAGTCTTCAAGCTGAGGGGGCTCGCTTTGCCCAGATGAAAGAGAATCTAACAGGGAAACTGCATGAACTGCAAGACAGCTATAAGAGACTACAGAATGAGACCCACAACGTAACAATCCAGAGAGACCTGTTATCCTCAGAGCTACAAGACTGTAATGCCAACCTTACTAGGGTCAAAGATCTCCTGGCAACCATCCAAGGGAATCAGAAGAGATGTAATACCAGTCAGCTGTGTTCTCCTGGCTGGGAGTTCTACAATGGATCATGTTACTACTTCTCTAAAGAAAAAATGACCTGGGGACAGAGTCAGTACGCCTGCATCCACGATGGAGGACACCTGGTCATCATAGAGAGTCACCAGGAGCAGGAGTTTATAAAACAGAGAGTGGTAGCACTGGGAATTGATCCTTATGAACACAGCCCCTGGATTGGACTGACAGATGAGAAGCAAGAGGGATTGTGGGTGTGGATGGACAGTACAACTCTTAATGAGAACATCAAGTACTGGGACTTTGCCGAACCAAATAACTGTGGGCCTAAAGGTGAAAGTGAAAACTGTGTCCGAATTGGTCAAAATTGCCACAAACAAAAAAATTGTTGGTTTGACTTTCCATGTGTCGAACCATCTAAGAGAATCTGTGAGAGTCGTGCAGTCTGTGAAAGTCGGGCAGGCACTCTATAGTGAAGCCAAATGTAGTGTATTGAATGAGTAACCAGCACAAGGCACCGTATTGTTGGGAAGTATTTAGGGCCCATTTTCTAGACACAGACCAaacctacactcttagaagaaaaggttccaaaaggggtTTTCgggtgtccccataggagaacgaTTTTTGACTCCAAGTAGAAGCCTTTTTGACTCCAGGTAGAACACTATTGGGTTCCGTGTAGATGAAGATCTCTgttgaaagggttctacctggaaccaaaagcactacttcaaatggttctcctatggggacagacaaTATATAGCcactttttttctaagaatgtattGCTGGACTGAGCTTGTCATATGTCATTTTGATTAATGCAGAGTATTACCTTCATTTGAGCTTGTGTCCACACAACAAATACTTCTGCTTTTAGCTATAATTGAATGTCATACCTGTGTAGTTCCTCCACATAGCCAGCTGGATCTGACAGATCCTACTGATATGGATGTAACTTTTTTATTTATATTGGTAAATATGCTTTCCATTGTAAAATTTGATATTTTAGTCAATTAACAAACGGTCTTGTCCACAGTGACCTACAATTAGTGCATTTTAGTGAATAATTAGATATACAGATCAATGCAGTAGTATTAGAAAGCCTGCATGGTTTAGCCTGCATGGGTTAGCCTGTAAGGTTTAGACTGTCATCTCAACCTTCTATTCAGGAAAATGTATCTAGGTTGTATTTCTAACAAtaggattacatttttttattcagTTGATTTACAGATTTATTTGTAACAATGGGATTCATTAATTCAGCTGTTTTTACAGATTTATTTGTAACAATGGGATTCATTAATTCAGCTGTTTTTACAGATTTATTTGTAACAATGGGATTCATTAATTCAGTTGTTTTTACAGATGTATATGTAACAATGGGATTCATTAATTCAGCTGTTTTTACAGATTTATTTGTAACAATGGGATTCATTAATTCAGTTGTTTTTACAGATGTATATGTAACAATGGGATTCATTAATTCAGTTGTTTTTACAGATTTATTTGTAACAATGGGATTCATTAATTCAGCTGTTTTTACAGATTTATTTGTAACAATGGGATTCATTAATTCAGCTGTTTTTACAGATTTATTTGTAACACTGGGATTCATTAATTCAGTTGTTTTTACAGATTTATTTGTAACAATGGGATTCATTAATTCAGTTGTTTTTACAGATTTATTTGTAACAATGGGATTCATTAATTCAGCTGTTTTTACAGATTTATTTGTAACAATGGGTTTCATTAATTCAGTTGTTTTTACAGATTTATTTGTAACAATGGGATTCATTAATTCAGCTGTTTTTACAGATGTATTTGTAACAATGGGATTCATTAATTCAGCTGTTTTTACAGATTTATTTGTAACAATGGGTTTCATTAATTCAGTTGTTTTTACAGATCTATTTGTAACAATGGGATTCATTAATTCAGCTGTTTTTACAGATGTATTTGTAACAATGGGATTCATTAATTCAGTTGTTTTTACAGGTGTATTTGTAACAATGGTATTCATTAATTCAGCTGTTTTTACAGATTTATTTGTAACAATGGGATTCATTAATTCAGCTGTTTTTACAGATGTATTTGTAACAATGGGATTCATTCATTCAGCTGTTTTTATATATGTATTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU882405 lncRNA downstream 49699 14742681 ~ 14742977 (-) True G774432
TU882403 lncRNA downstream 57237 14730868 ~ 14735439 (-) True G774430
TU882400 lncRNA downstream 64975 14724931 ~ 14727701 (-) True G774428
TU882387 lncRNA downstream 74530 14716505 ~ 14718146 (-) True G774419
TU882393 lncRNA downstream 82446 14710024 ~ 14710230 (-) True G774424
TU882476 lncRNA upstream 23957 14827169 ~ 14827561 (-) True G774485
TU882483 lncRNA upstream 31411 14834623 ~ 14834887 (-) True G774491
TU882507 lncRNA upstream 61142 14864354 ~ 14876876 (-) True G774513
TU882512 lncRNA upstream 70825 14874037 ~ 14880611 (-) True G774518
TU882576 lncRNA upstream 158078 14961290 ~ 15117567 (-) True G774565
XM_021614853.2 mRNA downstream 100309 14687934 ~ 14692367 (-) True LOC110531584
XM_021614855.2 mRNA downstream 145922 14633951 ~ 14646754 (-) True LOC110531585
XM_021614854.2 mRNA downstream 145944 14633925 ~ 14646732 (-) False LOC110531585
XM_036987390.1 mRNA downstream 165861 14531994 ~ 14626815 (-) False LOC110531563
XM_036987389.1 mRNA downstream 165862 14531994 ~ 14626814 (-) False LOC110531563
LOC118966000 mRNA upstream 214819 15018031 ~ 15035380 (-) True LOC118966000
XM_021614813.2 mRNA upstream 460954 15264166 ~ 15268722 (-) False LOC110531572
XM_021614811.2 mRNA upstream 460955 15264167 ~ 15268722 (-) False LOC110531572
XR_005053187.1 mRNA upstream 461014 15264226 ~ 15268722 (-) True LOC110531572
XM_021614810.2 mRNA upstream 466978 15270190 ~ 15278916 (-) False LOC110531571
TU882399 other downstream 68154 14724054 ~ 14724522 (-) True G774427
TU882202 other downstream 538519 14249401 ~ 14254157 (-) True LOC118966145
TU881137 other downstream 805094 13980328 ~ 13987582 (-) True LOC110531538
TU880908 other downstream 1093348 13697179 ~ 13699328 (-) True G773168
TU880902 other downstream 1200588 13590253 ~ 13592088 (-) True G773163
TU882572 other upstream 434846 15238058 ~ 15253973 (-) True G774562
TU882761 other upstream 549095 15352307 ~ 15361319 (-) True G774702
TU883038 other upstream 821990 15625202 ~ 15625920 (-) True G774954
TU883145 other upstream 979145 15782357 ~ 15787606 (-) False LOC110531603
TU883264 other upstream 1059108 15862320 ~ 15863834 (-) True G775139

Expression Profile