RNA id: LOC118966000


Basic Information

Item Value
RNA id LOC118966000
length 3683
RNA type mRNA
GC content 0.40
exon number 3
gene id LOC118966000
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 15018031 ~ 15035380 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tcttcttctctattcCTCTGACTGCAGAACTGAAACAAACCATCTCCAGGAGCAGAGAGATAACTCACCTGTCAACCTTCTCTTCCTTGGGTGGATTACACAACTAAAGACCATCATGGCATGCAAGACAAAAGACATACCATCAAACATAGAAAATATCATATCAAAAAGTATCTGCATCCAAGCAGGACCTCCTGCACGGTATCTTTTGGTAACAAATAAACAGAGTCTGGATAAGGATGATCAACTCAGAAAATCGACctttggagagagagagcccacCAAGGTCAACAAAACCATACTGATAGTGGGTGAGACAGGAACAGGGAAATCAACTCTGATCAATGCCATGGTCAACTACATCTTAGGTGTAGAGAAAAAGAACGAAATCTGTTTTGAGATTGTCGAGGAAGAAATTAGAAGTCAGACTGAAAGTCAAACTACAGCGGTCACTGTTTATGAAGTGTTTGGATATGAGGGCCTGAgatcctccttccctctcactaTCATTGACACTCCTGGGTATGGAGACACCAGAGGGATCCAAGAAGACAAACTGATCTCTGAAAAACTGTATCAATTATTTAGATCTTCAGATGGGATTCACCAAATTGATATTGTGGGTTTGGTGGTGAAGGCAACTGAGAATCGACTCAGTGACAGACAGAAGTACATTTGATGCAATTTTGTCTTTATTTGGCAAAGACATGGAGAAGAACATTGTAGCCCTCATAACACACTCAGATGGTGGGGAACCTACTGCTGCTCTGAAGGCCCTGGAAGTAGCAAAGGTCCCTGGTGCCAGAGATAAGAAGAATCGTCCTGTTTATTTCCTTTTTAACAACCGTCAGCATAATGCTTGTTGTGAAACAGAGAAACAGGCCAAGAAAGAAGCATCCGCCATGAGGCATGCACAGAATATATCAAAAGATGGCATGAAGGAATTCACAGAGTTCCTTGGGGGAATAATATCTCAAAACGTGAAGATGACAGAAGGAGTTCTGAGAGAGCGCAAACAACTGGAAGCATGTATCATCAACTTACAGGGGAGAATTGAGATGATCGAGCTGAAGCAGAATGAGATCCAGCAGACTCAAAGAGCTCTACAGGAGCACAAGGAGGAGGTGAAGAACAACAAGAACTTTACATACTATGTGAATGTCCCTTGCAAAGAAAAAGTCAAACTGGAGACAGGATGGGCTACCACCTGTCCAACCTGTAAGGAAAACTGTCACTATCCAGATTGTTGGTGGATCACATCACTGTCATGGTGTAGTGCTATGAAAAATAACAAATGCACTGTGTGTACTAAGAAGTGCTCCTTCTCAACTCATGAGAAAAAACAAGAAATATATGTAAATAAGACAAAAAAGGAAGAAAGGACTCACGATGATCTAAAAAAGAAGCATGAAATCAATGAGAAAGGGATGGGTGAAAAGGGGAATTTGATCTCTATACTTGAGGAAGAATTGGAGAAAGCTAAGGATGAAAAGGTAAATCTGGTGGAAAAATCATACCAGTGTGTGATGAGCCTGGAAGAGATTGCTCTAAAAGCTGATGCATTTTCCACTCATGTACATCTGGACTTCCTGATTGAGAAGATGaaggagacaggaaacacagagaagCTTCTGAAACTGGAGGAGATGAAGAAGAGAGCTGAGGAGGAACCCAAGGAGGGGATGAGTTACTTGAGAACTGGATTGAAGTGGGGAGTACAGGGTTTCTTTCAATGAAAAGCGCTCATATAATACAGAATAAAGAATGCTGGAGTACAGTATTATTTTTCAAAAGCTTTGACCACAGCACCTACTTTCATCTAGCACCTAcatgtactttttatatatacatatgttAACTACATGCAGTTTAAGACTTGTGGTTCATGgactttttctttgcaattcCAACATAAATCaggtgaaatatatttttgtcaCTTGAATGTCATTGTATCTGAATGCACCACAATTGAACATGTTTATCaatctgtatggaggagaagaaaacatatacatatatacattatcatatgattattatattattatcacaTTATCATATTATCATATCATATACATTATCACTAACAATTTTGAATTACTATGTCATATCCTACAGTATAAATAGGTAACTGCCATATTTGTCATCACACATGCTGCGGAAGGTAAACGCTGGAACATTTGTGTATGTTGTCTAAATGTTTCCATATAAGATGTATATAAATAAATCAACAACTGCATCATATGAGTTCTGACTATCTTGTATATTGTCAGTCTCTAAGTTTTGCAACTGCCATACATTTTGACCAAGGCAACGTTAATTCCATCAACACTGAGGCACCAAAAAATTCACTCGAAGCTATTACAGCAGCAAAAGGTACCTGTGCAAAAATGACAAGAATCAACCAGTTCATTTTGTGTTTAATCGCCATCAATGTGAACTCCTTGATGAGCAATATGTGTACTGTGGCAAAAGGCAAAAAATATCGGACCCCTCCCTCAGTGGCCGGTCCAGTTCCAGGGCCACATTCATGGACTCTAAGGCCAATTGTTGACTGGGGGATAAAAGAAGACATCGCCACAACAGCAGGTGACCAACAGAGGGAGCCAAATGCATGGGAAATACAAGTACTGGGACTTAAAAAAGAACCAACCTATAGGAAGACTGAGGAGGCGTGTTATGAACCGACCTACCAAGACGACGCCCCAACGGAAGAAAACCTATGGGCATCAGAGCCAGAGGACCTAACTTTGGACTAAGTGCTACCATACGTAATGCAATGGCACTCTGTGTTAAGATAGATTGCACTCCCGAACATCTTTCCCCAAACTGAGTGTCTAAAAGAGATATAAAAGGAGGAGAGATCAGTGCCTAGGCATGATCCTCTATCCATATGATTTGGACATCATAGAGAATCATCAGACCAGGTAAATTACTTTTACTATACTCTGTTTGTATTGACTACTTTGATATCAAGGCGCGAGCATAATATAGACTGGTATTTCTTAAAGAATTGTGTTGTACTATGCATCTCGATAAAAAGAATAAGTGAACAAGATTGTGTACGAGAGAACTTCGCCCCTCAACAATGCGAGGTGTGGAGAACTCTTGATAGCAACAACGTTCCATCTTTGGTGTGTCAGTAACAATCGCAGATCGGCAAGAGTGAAAAAGCCCAGGAATAGTTAAAGCCTCCTAGTAGCCAAAAGGTCGATAAGAAGGAATCAATATCTAAACAGTAGGCAGTAAAAACTATAGGAAATTCAGACTAAATAAGAAGATTATAGTAGTATAAACAGCAGAGGGCTGCtaaaatattactactcttatagagaccagttTCGGGAAGGACCAAGGGAATAGAGCGTCAAGGTAAATATATGGGTGTTTGCTTTGTTTAAAGAGTCATAAAGAAGTGTGTTAAGCTTTTTACCTTTGCAAAATATTACGTGGCATAGCATAGCGCATTAAGGATTGATTGAGCATTATTGATGTATTGGTACTGTATAACCATTGAATTGTAATAACGTGTATAAAGACCAAAAAAAGATTGACTTAATAAAAGCTTGAAACTTTGACAACTAGGCCAGATTAACGATCTGGAGAGCAAACGCCTCTGACACTCTCACTGAACAGAAAGTGACCCTGGTTATAGGTTAAAGTGATTGCACTAAAGAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU882584 lncRNA downstream 47176 14966596 ~ 14970855 (-) True G774569
TU882583 lncRNA downstream 52026 14964991 ~ 14966005 (-) True G774568
TU882512 lncRNA downstream 137420 14874037 ~ 14880611 (-) True G774518
TU882507 lncRNA downstream 141155 14864354 ~ 14876876 (-) True G774513
TU882483 lncRNA downstream 183144 14834623 ~ 14834887 (-) True G774491
TU882655 lncRNA upstream 59409 15094789 ~ 15176183 (-) True G774613
TU882521 lncRNA upstream 59680 15095060 ~ 15167011 (-) True G774526
TU882638 lncRNA upstream 68653 15104033 ~ 15111297 (-) False G774606
TU882640 lncRNA upstream 68653 15104033 ~ 15111297 (-) False G774606
TU882641 lncRNA upstream 68653 15104033 ~ 15111297 (-) False G774606
XM_021614849.2 mRNA downstream 214819 14792676 ~ 14803212 (-) True LOC110531581
XM_021614853.2 mRNA downstream 325664 14687934 ~ 14692367 (-) True LOC110531584
XM_021614855.2 mRNA downstream 371277 14633951 ~ 14646754 (-) True LOC110531585
XM_021614854.2 mRNA downstream 371299 14633925 ~ 14646732 (-) False LOC110531585
XM_036987390.1 mRNA downstream 391216 14531994 ~ 14626815 (-) False LOC110531563
XM_021614813.2 mRNA upstream 228786 15264166 ~ 15268722 (-) False LOC110531572
XM_021614811.2 mRNA upstream 228787 15264167 ~ 15268722 (-) False LOC110531572
XR_005053187.1 mRNA upstream 228846 15264226 ~ 15268722 (-) True LOC110531572
XM_021614810.2 mRNA upstream 234810 15270190 ~ 15278916 (-) False LOC110531571
XM_021614809.2 mRNA upstream 234810 15270190 ~ 15281666 (-) False LOC110531571
TU882399 other downstream 293509 14724054 ~ 14724522 (-) True G774427
TU882202 other downstream 763874 14249401 ~ 14254157 (-) True LOC118966145
TU881137 other downstream 1030449 13980328 ~ 13987582 (-) True LOC110531538
TU880908 other downstream 1318703 13697179 ~ 13699328 (-) True G773168
TU880902 other downstream 1425943 13590253 ~ 13592088 (-) True G773163
TU882572 other upstream 202678 15238058 ~ 15253973 (-) True G774562
TU882761 other upstream 316927 15352307 ~ 15361319 (-) True G774702
TU883038 other upstream 589822 15625202 ~ 15625920 (-) True G774954
TU883145 other upstream 746977 15782357 ~ 15787606 (-) False LOC110531603
TU883264 other upstream 826940 15862320 ~ 15863834 (-) True G775139

Expression Profile