RNA id: TU881660



Basic Information


Item Value
RNA id TU881660
length 727
lncRNA type sense_over
GC content 0.49
exon number 4
gene id LOC118965999
representative False

Chromosome Information


Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 15217597 ~ 15248137 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GAGTGTCTCTCCTCAGGGTCTCCTCTACTCTGGAGAGAGAGTCAGGCTGCAGTGTGTCATACCAGGCTACACAGACTGGAGGTACTACTGGTACAAAAACAACCAACACCTTCCTGATGAGACCAGTAAAGTCATAGATATCACCATCCCCATCACTCTGACTGGTCAGGCTGGTCAGTACAGGTGTGAAGGGAACAGAGTGTCTAGACCCACATCTTCACCACCAAGTGATCCTGTCACTCTCACTGTAAAAGCTCTGCCTGAAACTACAGTGAAACCCTGTGTTCACCGGAGAAACAGTCACTCTGACGTGTTCAGCTGGGTCTTACAGTGACTGGAGCTATAAATGATTATCAGCCAAAGACCACACTGACTTCAGACAAAGAAGACGTATTCACAGGAGACAGAGTGACACTGAACTGTACTGTTGAGTCTCCTGGATGGAAATTTTACTGGTACAGACACAGACCAGACTCTACACCAGTAACCACAACCTCTGGATACTCCTACACACTCAGCAGGGTCAGTGTCTCTGATGGAGGACAGTACTGGTGCAGAGCTGGGAGAGGAGACCCAGTCTACTACACCCTGTACAGTGACCCAGTCCAGATAAACATTACTGagaggcCTGTTGCTGTTCTGACCCTCCAACCCAACTGGACCCAGATATTCATTGGAGAGACTGTCACTATGAGATGTgacatacagggaggaggagactctGACT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU881814 lncRNA upstream 10278 15158919 ~ 15219494 (+) False G773940
TU881826 lncRNA upstream 12401 15198764 ~ 15217371 (+) True G773950
TU881815 lncRNA upstream 66106 15158799 ~ 15163666 (+) False G773940
TU881816 lncRNA upstream 66106 15161878 ~ 15163666 (+) True G773940
TU881787 lncRNA upstream 118497 15103857 ~ 15111275 (+) False G773917
TU881837 lncRNA downstream 6452 15245032 ~ 15245775 (+) False LOC118965999
TU881838 lncRNA downstream 6452 15245032 ~ 15248002 (+) False LOC118965999
TU881841 lncRNA downstream 6452 15245032 ~ 15248137 (+) True LOC118965999
TU881651 lncRNA downstream 24201 15262781 ~ 15266210 (+) False G773799
TU881653 lncRNA downstream 27332 15265912 ~ 15268676 (+) True G773799
XM_036987400.1 mRNA upstream 43826 15139164 ~ 15185946 (+) False LOC118936439
XM_021614816.2 mRNA downstream 13885 15252465 ~ 15262643 (+) False LOC110531573
XM_021614815.2 mRNA downstream 13898 15252478 ~ 15262641 (+) False LOC110531573
XM_021614817.2 mRNA downstream 18624 15257204 ~ 15262642 (+) True LOC110531573
XM_036987415.1 mRNA downstream 104344 15342924 ~ 15348526 (+) True LOC118966002
XM_021617138.2 mRNA downstream 113702 15352282 ~ 15362094 (+) True LOC110533001
TU881409 other upstream 845606 14382670 ~ 14384166 (+) True G773601
TU881408 other upstream 845681 14382670 ~ 14384091 (+) False G773601
TU881387 other upstream 903939 14306630 ~ 14325833 (+) False G773583
TU881365 other upstream 914522 14311468 ~ 14315250 (+) True G773562
TU881333 other upstream 1012920 14213449 ~ 14216852 (+) False G773535
TU881866 other downstream 59878 15298458 ~ 15299214 (+) True G773983
TU881923 other downstream 136644 15375224 ~ 15377188 (+) True G774021
TU881976 other downstream 226780 15465360 ~ 15465624 (+) True G774065
TU881932 other downstream 232927 15471507 ~ 15501076 (+) False LOC110531590
TU883269 other downstream 627509 15866089 ~ 15866708 (+) True G775142

Expression Profile