RNA id: TU881841



Basic Information


Item Value
RNA id TU881841
length 340
lncRNA type sense_over
GC content 0.39
exon number 2
gene id LOC118965999
representative True

Chromosome Information


Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 15217597 ~ 15248137 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


cctacaatgtgattttctggatttttttttcttctcattttgtctgtcatagttgaagtgtacctatgatgaaaatacaggcctctctcatcattttaagtgggagaacttgcacaattggtggctgactaaatactttttttgccccactgtatgtctctaTGTTTTATTCTTAGGGAATTGTTTTACTTCATGCAGGtccttgagggagatggagggataaataactttgtgtggtgatatgttacagGtccttgagggagatggagggataaataactttgtgtggtgatatgttacaggtccttgagggagatggggggataaataactttgtgtg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU881660 lncRNA upstream 6452 15229772 ~ 15238580 (+) False LOC118965999
TU881664 lncRNA upstream 8565 15164436 ~ 15236467 (+) True G773808
TU881814 lncRNA upstream 25538 15158919 ~ 15219494 (+) False G773940
TU881651 lncRNA downstream 14644 15262781 ~ 15266210 (+) False G773799
TU881653 lncRNA downstream 17775 15265912 ~ 15268676 (+) True G773799
TU881853 lncRNA downstream 27511 15275648 ~ 15276137 (+) True G773973
TU881859 lncRNA downstream 30738 15278875 ~ 15279216 (+) True G773977
TU881861 lncRNA downstream 31843 15279980 ~ 15280260 (+) True G773979
XM_036987400.1 mRNA upstream 59086 15139164 ~ 15185946 (+) False LOC118936439
XM_021614816.2 mRNA downstream 4328 15252465 ~ 15262643 (+) False LOC110531573
XM_021614815.2 mRNA downstream 4341 15252478 ~ 15262641 (+) False LOC110531573
XM_021614817.2 mRNA downstream 9067 15257204 ~ 15262642 (+) True LOC110531573
XM_036987415.1 mRNA downstream 94787 15342924 ~ 15348526 (+) True LOC118966002
XM_021617138.2 mRNA downstream 104145 15352282 ~ 15362094 (+) True LOC110533001
TU881409 other upstream 860866 14382670 ~ 14384166 (+) True G773601
TU881408 other upstream 860941 14382670 ~ 14384091 (+) False G773601
TU881387 other upstream 919199 14306630 ~ 14325833 (+) False G773583
TU881365 other upstream 929782 14311468 ~ 14315250 (+) True G773562
TU881333 other upstream 1028180 14213449 ~ 14216852 (+) False G773535
TU881866 other downstream 50321 15298458 ~ 15299214 (+) True G773983
TU881923 other downstream 127087 15375224 ~ 15377188 (+) True G774021
TU881976 other downstream 217223 15465360 ~ 15465624 (+) True G774065
TU881932 other downstream 223370 15471507 ~ 15501076 (+) False LOC110531590
TU883269 other downstream 617952 15866089 ~ 15866708 (+) True G775142

Expression Profile