RNA id: XM_036987407.1


Basic Information

Item Value
RNA id XM_036987407.1
length 4415
RNA type mRNA
GC content 0.49
exon number 8
gene id LOC110531571
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 15270190 ~ 15281871 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTAGGTCTAAGCGTCTGTAGTAAAACTCATTGGACAAACTGCAGTCCTGTGATTGTCTTCATAGAGGTGAAATGGGAGCAAGGATTATGCCGTGCACTCGCCTCGTCTACCAGCGAAAGTGAAGgtctgtcctccccctctcctccggcCTCCAAGATAGATTCCCTCAGGAGTAAGGTTGAGCTCCTCCGCCTGCCTCTTGCCCTCTCCTCCAAGTCCATCAGCCACCGCAAGAGTCAGCTGGGCGGAGCCGGGGAGCGCGGCACGGGGGGAGGAGGGACCCACAGGGGCAAACCCCGCCCACCGGCCTCCGACATGGACAACGAGTCGCAGTATTCAGGCTACTCTTATAAGTCCTCGCACTCCCGCAGCTCCAGGAAGCACAGGGATAGGCGGGACAGGCACCGCTCCAAAAGCAGAGACGGCAGTAGTCGTGGAGACAAGTCAGTCACCATCCAGGCCCCCGGAGAGCCTCTACTGGACACAGAGTCCACCCGTGGAGATGACAGGGACGATAACTGGGGTGAGACCACCACTGTGCAGACTGGCACGTCAGAACACAGCGTCTCTAACGAGGACTTGACCCGCGTCTCCAAGGAGCTCGAGGAGTCCTCCCCGTTGGAATGCCGTCGTTTCCTGGGCCCTGCGTTGGGCGCCGTCCTGGGCCTCTTCGCCCTGGTCACTCCCCTGGCCTTCCTGGCTCTGCCCCAGCTGCTGTGGCGTGAGTCCCTGGAGCCCTGCGGCACGCCCTGCGAGGGCCTCTACGTCTCACTGGCCTTCAAACTCCTGGTCCTCCTCATCTccacctgggctctgttcctgcgCCCGCCGGGCGCCACCCTGCCCCGCCTCTACGTCTTCCGCTGCCTGCTGCTGGCGCTCGTGTTCCTCTTTGTAGCGTCCTACTGGCTGTTCTACGGCGTGCGCGTGCTGGAGCCCCGGGAGAGGGACTACAGGGGTATCGTGGGGTACGCGGCGTCGCTGGTGGACGCCCTGCTCTTCATCCAGTACCTGGCCTTAGTGCTGCTGGAGGTCAGACACCTGCAGCCTGCCTTCTGCCTCAAGATGGTGCGCACCACAGACGGGGCTAGTCACTTCTACAATGTGGGACACCTCAGtatccagagagcagcagtgtgggTGCTGGACCAGTACTACAGTGATTTCCCAGTCTACAACCCTGCTCTCCTCAACCTGCCCAAGTCCATCCTCTCTAAGAAGACTTCTGGCTTCAAAGTCTACACTCTGGGAGAAGAGAACAGCACCAATAACTCGACAGGTCAGTCCAGAGCGATGATCGCTGCGGCGGCCCGAAGGAGAGACAACTCCCACAACGAGTATTACTACGAGGAGGCAGAGATGGAGCGCAGAGTCCGCAAGCGCAAGgccagGCTGGTGGTGGCGGTAGAGGAGGCTTTCACGCACATCAAGCGTCTCCAGGACGACGAGCCGGCCGCCTCGTCCCCCAAACACCCCCGTGAGGTGATGGACCCCCGGGAGGCGGCTCAGGCCATCTTCGCCCCCATGGCCCGGGCCATGCAGAAGTACCTGAGGACCACGCGCCAGCAGCCCTATCACAGCATGGAGAGCATTATCAACCACCTGCAGTTCTGTATCACGCACAACATGACCCCCATGGCCTTTCTAGAGCGCTACCTCTCCCCAGGCCCTACCATGCAGTACCAACGGGAGAATGGTAGGGGTCGCCAGTGGACCCTGGTGAGCGAGGAGCCGGTGACGTCCGCCCTGCGCCCGGGTCTGGTTTTCTCCCTGCGCCGACTCGACTTCTCCCTGGTCGTCACTGTGGCGCCCCTCCCATTCCTCCACCTGGGGGAGGAGTTTATCGACCCCAAGAGCCACAAGTTCGTCATGAGGCTGCAGTCGGAGACCTCTGTGTAGAAATGGAGAGAAGACAAGAAATGAAAGggtagaggtgggagaggagatgaTACGAGTGAGGGAAAAGAGACTATGTTTCAAATTTGCTCAAAGCCCAACTCTGACCtctgcgagagagggagagaagacacaaaggtgaagaaagagagaatgaagagaggtagagagaatatGAGATGGGGAAAGgaacagagagagtgacacaTTTTCAATTTTACTCAGAGCCCAACTCTCTGGGTCCTCTCTTACTGTTTTTAACTGACCAATCAGACACTCCGGGGTCATCCAATCAGACACTTCACCTAGACCTGAGTGTGTTGACACCATGTAAGCTTGATACTGCTACCAAGACTGTGCAGAGTCCTAGGGAGTTATTACACTTACACAGACCTTAATACAGCTCATAGCTCTGTTTATAACGATGTAATAACCACCTTATGTGATTTAAAGCCACCCCAAACCCTttacgatgatgatgatgatgactgttCAACGCAACTCAATTGCTGTGTTTTCTCAAAATCCCCGGATTTTGGTTAGAAAAACTCATAGTAGACTTTCTTGGTTCTACATTCCACAGCATATAtacgcaccctattccctatatagtgcactacatttgtaCCCTAttttctatgggccctggtcaaaagtagtgcactatatagggaatggaggGTTATTTCAGACGCATCCTAGATGTAGCACTGTCTAGACAGCTATCTCTTTTCACACAAAGCAGTGGAAATGTATGTGGCGTCTGCCACCAAGGGCTGGAGGGGAGACCACTGTGGTCGTCCTGTTtaattaactgtgtgtgtgtgttactttgtTACAGTCATTGGGACCAGTATGTTTGTCATTCCTTGGCAATAACTGCACTAAATTCACAATCAGCCTATTGAAGTTGACATTACTATGTTactcaggggcgcaactttcactgagGACGGGGGAACAtgcccccccatacacacacacattctgaaattgcattttgtgctccccagttttatcataggaatgtgatacaaaacgaggaaacggtgtgctttaggaccatgcggacacctCCGAGTGGTTGaataggctgtttggagtgtttatcagaccaaaaattaacataataataataattaggtcccccccacttctaataCCTAATTTGCGCCCCTGATGTTACTAACCAATAAGCTGATGGGCTGTTAAGCAGTATAGGCTCAACGAACAGATACATGTGAATAGGAACACTTACATGTATGAAAAATAACTAGAAAAGTCAAGTTTCAAGTAAAAACTGTAGTTGCAAATCAGCTACTACATCAACCAATCAGGTGATTGAAATATCACTGAATAGACCAATAAACGGACTGTTATTTTCATTGGACTAAATCTGCTTACTGTGGGTTCTTCAAGAGACAGCTGACGAATGTTTAGGTGAAACACTAACCggctttaaaacattttttaataagaaatacaATGTTTTTGTGACGTTAATGGATAATATTATGTTGGACTTTTTATCTGTATTCCAGTGTTGGTTTTATAATGAAGGAGGAGGAACAGATACAAGAAAACAGAACCACTTGTCATGAGACATTAATTAGTTTCTTTGTGCCAAATCCCACTCAACTCCAGATACAGGGGCGCGTCCCAATAACATCTattttctcctgaagtgtgcaatTTTGTACTTCTTCCCACAAgtctaaaagcattggattggtaaAGGCATGGGCTAGAGGGAGTTTCATATACCATCACATCGGGGAAGGGACGTGAACAAGTCAAGTGACATCTTTGAGGAAGGAGCGATACTTGGGACCCAGCCATAGTGTACCACATGACTACTGTTCTGAACATGtgaccaaaacacagaagtacaaaataataaaaacaccgttgtcacaggaggttggtggctccttatttgggaggacgggctcatagtaatgactggaatggagtaGTATCGAACtcctcaaacacatggtttccgtATTTGATACCTTTCCATTCTCTCCATTacagttattatgagccgtcctcccctcagcagcctcttgTATTGAGTGCGTGGTGTGACTAAGGTGTGAGTAATATGGAAACATTGTGCTTGATGATTTGTTTCGATTCACAGGCTGAGATGAATATCCGTAACAGTCCTAATAGGTCCTGCACACACAATGGTTCTTGTCCTTTTTGGCGGCTAACAGCTACAGTAGTCTGTTGTGAATAAATGGTTTgatccctttttttttttacatgtgtaCGGTATGTTTATTAGACCTTCATTTCATTATGAACCCTGATGCATGTAGTTTTGTAAAGTTACATTTTTTGctgcatttttttttgtttcatttcATGTCGAAGTGAAGTCCCTAACCTTGTTTTTTAAGACCAATGTGATGTAAAGACATTTGAAgttgaaaaaaatgttttaatattggATCATTTTAGGACAAAATTGTTACAGCCTTTTTAATAAATGATCTCTTGATATGATGCTA

Function

GO: NA

KEGG:

id description
K04510 VANGL; vang-like

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU882726 lncRNA downstream 891 15269030 ~ 15269299 (-) True G774675
TU882724 lncRNA downstream 19890 15249229 ~ 15250300 (-) True G774673
TU882518 lncRNA downstream 33721 15164072 ~ 15236469 (-) True G774523
TU882689 lncRNA downstream 39155 15159121 ~ 15231035 (-) True G774641
TU882684 lncRNA downstream 52954 15155093 ~ 15217236 (-) True G774636
TU882735 lncRNA upstream 2448 15284319 ~ 15285918 (-) True G774681
TU882738 lncRNA upstream 24479 15306350 ~ 15307817 (-) True G774683
TU882789 lncRNA upstream 123631 15405502 ~ 15408709 (-) True G774728
TU882833 lncRNA upstream 225461 15507332 ~ 15507668 (-) True G774767
TU882781 lncRNA upstream 277586 15559457 ~ 15561311 (-) True G774720
XM_021614813.2 mRNA downstream 1468 15264166 ~ 15268722 (-) False LOC110531572
XM_021614811.2 mRNA downstream 1468 15264167 ~ 15268722 (-) False LOC110531572
XR_005053187.1 mRNA downstream 1468 15264226 ~ 15268722 (-) True LOC110531572
LOC118966000 mRNA downstream 234810 15018031 ~ 15035380 (-) True LOC118966000
XM_021614849.2 mRNA downstream 466978 14792676 ~ 14803212 (-) True LOC110531581
XR_005053189.1 mRNA upstream 2440 15284311 ~ 15285624 (-) True LOC118966001
XM_036987410.1 mRNA upstream 4012 15285883 ~ 15313920 (-) False LOC110531570
XM_036987408.1 mRNA upstream 4012 15285883 ~ 15314495 (-) False LOC110531570
XM_036987409.1 mRNA upstream 4012 15285883 ~ 15314495 (-) False LOC110531570
XM_036987412.1 mRNA upstream 4012 15285883 ~ 15314495 (-) False LOC110531570
TU882572 other downstream 16217 15238058 ~ 15253973 (-) True G774562
TU882399 other downstream 545668 14724054 ~ 14724522 (-) True G774427
TU882202 other downstream 1016033 14249401 ~ 14254157 (-) True LOC118966145
TU881137 other downstream 1282608 13980328 ~ 13987582 (-) True LOC110531538
TU880908 other downstream 1570862 13697179 ~ 13699328 (-) True G773168
TU882761 other upstream 70436 15352307 ~ 15361319 (-) True G774702
TU883038 other upstream 343331 15625202 ~ 15625920 (-) True G774954
TU883145 other upstream 500486 15782357 ~ 15787606 (-) False LOC110531603
TU883264 other upstream 580449 15862320 ~ 15863834 (-) True G775139
TU883736 other upstream 630965 15912836 ~ 15913294 (-) True G775532

Expression Profile