RNA id: XM_036987409.1


Basic Information

Item Value
RNA id XM_036987409.1
length 7485
RNA type mRNA
GC content 0.53
exon number 42
gene id LOC110531570
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 15285883 ~ 15321030 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCTTGTGTTTGTCTTGCTCTTCGGACATGGTTTGATATCCATACACAACTACCAAATACTGTCTGGGAGAGgactagctagctaataacaaCATAATATGGAACATCGGTTTGAAGGCTGCAATTAAATACATGAGCATATGAATGCAATCAGAAATGTGGATTAATCAGGGAATGCGAGGAAATATAGGACAACGGGATCTCACCTAATGGAATGAACCAGTTTGATCAAATGAAGCGAGTTGTTTGGAAAGCCACGACGAATCGAATGGACTGTCTTTCCATAAAGAAATGAATGCAGGTTTAATGAACACATTGTTACGAATGGGGCACTGGACATACTATTACATTCAAGAAGGATAACTGGCCTCAGTCGCAGCGTTTCAGATTCTACCTTGCGAATGTATTTGAGTGGCAGGCTAATTCTTTAGCTTCAGCTAGACCCCTGTCGCGTCGGCGTCATAGACGACGCTTGTGCCCAGTCACAGAGCGTAGGTGATGTCGCGGATGGCATTCGGCCTCTATCAGAATTAACTAGGTAACCAGCCATTATTTGCTTATCAAAAAACAAGTATTCTCTACACAAGTACTTGGAGATTGCCTGTGAAAACATGAGGAAGGTGCTCAGAGCAGTCTCTGAACGGAATAAGCTCCCCACTAGCTGACGTGAGGAGTTGAAACGTAGCAGGCGGCAGCACTGTGGAACTCTGCGGAAGAAATTTGAAGAACAAAGGAGATGGTCACCCTGCTGTGACATAATTGGACCGCCGGAGAGGACACGGACGCGCTCGAGCCGTCTGCAGTCATGAGTCTCCGCACCCCCACCTCAACACTGGACAGGCTAAGCAGCCTGACGATAGGAGACTCGGAGCGCAACACCTCCAGCGGCCAGCAGAGGGAGCCTCCAGCTGACATCCCCCCTGAGAACACAGgtcCAGGTCTGGTTCAGAGATGTGTGGTGGTACAGAAAGACCAGCTGGGGTTTGGCTTCACCGTGTGTGGCGAGAGGATCAAGCTGGTGCAGAATGTCCGACCAGGTGGTGCAGCAGTCAAGGCAGGGGTCCACGAGGGAGACAGAATCATAAAGgtGAACGGCTCGCTGGTGTCGTCCATGTCTCACCAGGAGGTGGTGAAGCTCATCAAGTCTGGGCCGTATGTTGCCCTGACACTTCAAGGACCGCCCCCTTCAGCAGCCGCCCTCGTCCTCCAACCCCTCCCCGCTGACCTCTTACCCAATCAGAGGACGTCACTGGGAGGTGAAGCCccgccaccaccacctccacccctgCCCCCCGGACTTACCAGCACCCCCTCCCAAAGAATCAACAAACCACTACAGAACCTAGATGTACAGAAACACGCCACTCAGATCCTCAGGAACATGTTGGAACAGGGAGAGGCTGAGCTCCAGGACTTGATGGAGGAGCTGTCACGGAACCCCTCCCCATCACTGGAGGAGCGAATCGATAGTGCCAAGAGGCGCACCCAACAAGTGCGGGTTAAAATCAAGCAAGATCTGGATGGAACTCGCCCCGAAGCTGTGTCCAACTATGTAATAGCAGGAGATGCTCGGCTGTCGGTGGACTCAAGTGAAGGAGACTTTGAGACCTGTGAGAgcccccactcctccccctccttcttcaGGACCCCCCTACGCTGGAGACAGGGCTccgacacacacaccttctctgaCTCGGCTGGGAAGACTCAGATCATTGGCcccgaggaagaggaggaagaggacgacAGCTATGCTGTCAATGAGATGGACGGTCCATTTCAGGACATAGAGCTTCTCAAGTCGAGACCGGCCCATATGACGGTGTTCATGAGATATGTCTTCAGCCAGCTACTGGATCCCAACCCACTGCTGTTCTACCTGTCAGTGGAGGCCTACCTGGGCTCCAGCCCTAAAGACGCCCGTGCCCTCGCGCCTCAGATCTGCTCCCACTTCCTGGACCCTGACGCTGCGTTAAAAATCAGAGTACGAGAAGAGTACCTGGCTGATATAGAGAGTCGTCTCCATGCCCAGGAGGACATCAGGGGACCTCTGTCTGAGCTCCAACAGCAGGTGCTACCTGACATTCAGGACCAAATACAggactacagGAACAAGCAGATGATGGGTCTGGGCTCTCTGTTTGGAGAGGGAGACCTGCAGCAGCTGGATGGAGACCCAGCCAAGGAGAAACAGGTGGTGGACAGACAGGTCACTGCTCTCTGGGAGATACTCTCGAAGCACGAAGACGACAGAAGttCTCCTCTAGCCTCTGCGGTGCTGTTGTACCTCCGTCACTCGGGCATTAAGCTGAGGGACTCCAGGGTGTTTCCAGGACTCAGCACTGAGAAGGAGAAGTGGCTCGCCTTTTTCCCCAAGACCAAGAAGCTGAGCAGTGcaaagaaagagaaggatggagaggacaggaagagaaacCCCATCCTAAAGTATATCGGCAAGCCCAGGAGCACCTCCCAGTCcaCGTTCCATGTCCCGTTGTCTCCCACTGAAGTGCGTCCTGGCAGTGTGAGGAACATCATCCAGCAGTTTGAGAACCACCCAGAGATCCCCGGGGAGGAGGGGGACGAGGGAGACCTCCAGAGACTGTCCTCCAGCAGCCTGGGAGAGGACAGTATGGAcagCCCTATGGTGTCGGTGCGTCTGGCTCGTAGTGAGTCTCTGAAGGCGCAGGGGGAGGGGCGTCGGCGGGGCGGGGCTTCAGGAGTGGAGACAGTCCCTCGTTCCCGTAGCGACGTGGACATGGAGGACTGtggggaggagatagaggggccGGGCCTGAGACCCCTACACCACAGCGCCTCCTCCTCAGCCACCAGTAGCTCAGCACGATCCTTGGAGAACCCCACGCCTCCATACACCCCTCGATCGTCTAGACGACAgtttgaGGAGTCCCCGGTGGCCCTGCTCCCTGATGCCCCAGCCCTAGAGGACGACGTGGTGGACAGTCACAACTGGCAGGAGACAGTGGCCCCTCAGGTCCTGGCTACACTCTGTCCCCGAGAGGTGGACCGACAGGCCGTCATTTACGaGTTGTTGACGACAGAGGCGTCTCACCTGCGTACTCTCAGGGTCTTGGATCAGGTGTTTTTCCAGAAGATGAGGTGTGTTCTGAGCTCTGACGAGCTGGCCTGCATCTTTCCCAACCTGCCTCAGGTctaccaactacatgTAAGCCTGTGTGAAGCCATGAAGAAGAAAAGGGAATCTCCCATCGTTCAGGGCATCGGTGACATCATGCTGGCCAGGTTTGAGGGCGTGGCGGGGGAGGAGTTTCAGGAGCAGGCGTCCCACCTGTGCAGCCAGCAGTCTCAGGCTCTGGAACTCATTAAGAACAAGCAGCGCAAAGACCCCCGCTTCACACACATCATCCAGGAGTGTGAGGCCAGTCCTCACTGTAGGAGGCTGCAGCTGAAGGACCTGCTGGTGTCTGAGACACAGAGACTCACCAAGTACCCTCTGTTACTGGACAACATCATCAAACACACAGAGGCTGGCTCCACAGACCTCCCGCCTCTCCAACGTGCACAGGCCTGCTGCCGTGGGATTCTGCAGGCCGTCAATGAAGTCGTCAGGGAGACTGAACACCGGCAACGACTCAACCAATACCAGCGCAAGCTGGACCCCACGCCACAGTTCAAGagTCTGGACCTGACCAGTAAGACAATGATCCATGAGGGTCCTCTCACCTGGAAAGTCAGTAAAGACAAAACCTTAGAGATCCAGGCCCTGCTGCTATCAGACCTGCTGGTTCTGCTCCAGAGAGGTCCAGACGACCGGCTGCTACTGCGCTGCCCGTCCCGCTggctggggggaggaggaggtggtagcgGGGACACCAAGGCCTCCTTCAGCCCCGTGGTCCAGCTAGACTCCCTCCTGGTGCGCTCTGTGGCCACAGACAACAAGGCCCTGTACGTCATCAGCACCACAGAGAGAAAGATCTATGAACTGGTAGCGGGGACGTCCTCAGAGAAAAACATCTGGAAGGACCAACTTGAAAAGACCATCTCATTGGTTGCTGGCTCCTCACCTTCGACCAATAACAGATCCACACCTATTTTctccccaAGTCTTGGCAACGCTTCCCCTGTCTCAACTGGCAGCCATGTCTATCAATCAGACGACTCGATGACGGAGCAGGTGGTTTTCATGGAGACGGACTCCCCTAACGATGAGGATAACGAGCTCACACGCACCACACCAACGGACCAATCAGGAGCTTTCTTCTGCGGGGAGGGGCAGGACTACGTCAAGCGACGAATTGGAGTAGCAGAGGCAGCTCTTGAAGACGTGGAGACGCTAAGGCAGCTGATTTTCCGCGACCTGGAAGATGGGTGGAGTCACGGCTCAGATGGCACGCCCACAAACGAGGCAGCCAATGAGAGGAGCCCGTTCAATGACCACCAGAGGACGCCGTCCTCTGAGACTCTCCTTAGCGTCAGTCCCAGCCAATGGGAGGCTGAGCACGCAGAAGCACCGCCCTCGGAAGTGGAGTGCCCAAGTGTGCATGTTGTGAGGAAAGCTGTGGTTGCGGGCTCCCCTTCTATCCCTGATGACATCACTGAAGATGTCACCCTCCACTCTGACCAATCACCTGAGCCGAGAGGCGAGGCCAGTGTACGGGGAAACGTGTTCTACCTGGTGATGCCTACAGAGCAGGGAGAGGGACTGCTGGATGAGAGTCACACAGATGAGGTCAACGACCCCCCCACCCCGACCACCACTGAACTTCCTGATCTGGAACAGGAAGTGATTTCATCGCCCGTACAGACTCATGAGAAAGAAGGGCAGGTCGCTTCCATCATGTCTGCGGACAATCAATCGGAGAGGGGAAATCTGAGTCGGCAGGAAGGGCAGAGTCAATCACAAAAGAGCCTCCAGAGCCATATAATCAAAAACGTGGATGACATTTTCCACACCATCGAGGAGTTGATGAGAAAGCTGCACCAGCTGAGGGACATAGAGACAGCTCATCACCAGCTCCGGAAAACACTGAGAGAGCCGCCTGTCAATCCAGAGTCTGGTGACCTCTTTCGTATCCAGGCAACCATCGTCAGGACACCGTTTCTGGACCGGGACCCAGGGGACGgaaaGGAGGCGAGCCCAGCAGAGCCAGCCAAGCTGAAGATCCTCTCCACTGGATTCTAACGTTGTCATTTCAGCGAGGACTTAAGACTTACCCCCACCCTGCCGTagatatacgcacacacacactgatggacTGGGACCCCAACTTTTACCCCCTAACCCCCTCTCACACCCCTCACCATCAGCCCAATCCCAGCACGCACTGCTCATGGGAGCAGAATCCAGGAAGTATCGGGATGTCGTTGGCGTTGCCCTGGGAGACCAGGAATTGATGCAGGACTGATGCCCCTGCCCCCTGACACCCAAGGGGCTGCCCCCAGCATGGAGTTAGGGTGAACTCTGACCTCGGCGGAGCAGGAAAGAGTCCTGGGATGAGAGGATGGACAGATGAAGGGGGGAAATGGAGAGAAGCAGTGATGAAACAGTTGTGTGAAGAAGCAAAGAGAGTACAAGAAGTGAGAGGAATCTAAATTGCGTAATGTCAAGGATAAAATGTTGAATGGAATGAATAAGGTTGGCTACATTGGAAGGAGAAGTTAATATACTTTGAAAAGAACACTGGGTTTAAGGGAGAGAGTTGAGAAGTGACTGATGTTTTGACAAAATAACGACTGGACAACTGAAGGAACCCGGCACTTTACCCACAATGCATCCTCTGTCATGTATCCATACGCCAAAGCTGATTGGACTGGTGAGGGATAGGACACTGGACAGATCACCGGCTCCATTGGGAGTCAAAGCTGCACCTAGTTTGAGCCAAGATGGTAGTTCTTTACCGCTGGTTGCTTTACAGTATGCTTGCCATGGAGGCTGATCGAAGGACTGTGTCTATATAGCTATATATTCAGGTTTATTGCACTGGGccaagaggaaggaaggagggagtaaAGAGATCACAACATGCACAGTCCTCATTCATCCATAAAATCATTCATGTTATGTGATACATATGTTTGATaatcacacaggagagaaacgcCATGAAGGAAGAGGGGTGTTGTTGTTAAGGGATAACCAAGATGGCGGTCGGTCAGTCATTCTGACGTATGCAGCAAGTCCTGCATGTATGTACAGCTGCTAAGCTACAGGATGGGTTGTCTGTAGCGACAACATCTTCCCGGTGACCTCAGTAACGCGTCGTGGTAACACTACTACCGCACTGTTCTCTACTGAATGGCTGTTGTCTCGTCTACAGCGCTACTCCTAGACATACATGACCACTACGAAAAAGGATACATGTTCAATGAATGCACAGATGTCTATCATGTCGTCATCATTTCCTAAAGAACGCTctactgtattgtgtgtgtaaTACTGTGAATCCCCTCTATACTACTATACCATGACTAGTGTTTGCTGTACTGCCACAAAAAAACATGAAGGGATGTTCCTTCATACAGAGTGGCATAGGTCTGAACTGAAAGACACCTTTTGCACAGGCGACTTGTATTCATTGGGAGAGGAAGTCTGTTAACCCTCTAAGTGTGTGGTCAGCGTACGATATGTCTGTGTgacactacagtgtgtgtgtggtcagcgtACGATGTCTGTGTgacactacagtgtgtgtgtggtcagcgtACGATATGTCTGTGTgacactacagtgtgtgtgtggtcagcgtACGATATGTCTGTGTGACACTACAGTGTGTGTGGGGTCAGCGTACGATATGTCTGTGTGACACTACATTGTGTGTGTGGTCAGCGTACGATATGTCTGTGTgacactacagtgtgtgtgtggtcagcgtACGATATGTCTGTGTgacactacagtgtgtgtgtggtcagcgtACGATATGTCTGTGTgacactacagtgtgtgtgtgtggtcagcgtACGATATGTCTGTGTgacactacagtgtgtgtgtggtcagcgtACGATATGTCTGTGTGACACTACAGTGTGTGTTGTCAGCGTACGATATGTCTGTGTgacactacagtgtgtgtgtggtcagcgtACGATATGTCTGTGTGACACTACAGTGTGTGTTGTCAGCGTACGATATGTCTGTGTgacactacagtgtgtgtgtggtcagcgtACGATATGTCTGTGTgacactacagtgtgtgtgtggtcagcgtACGATATGTCTGTGTgacactacagtgtgtgtgtggtcagcgtACGATATGTCTGTGTgacactacagtgtgtgtgtgtggtcagcgtACGATATGTCTGTGTgacactacagtgtgtgtgtggtcagcgtACGATATGTCTGTGTGACACTACAGTGTGTGTTGTCAGCGTACGATATGTCTGTGTGACACTACAGTGTGTGTTGTCAGCGTACGATATGTCTGTGTGACACTACAGTGTGTGTTGTCAGCGTATGATATGTCTGTgacactacagtgtgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU882726 lncRNA downstream 16584 15269030 ~ 15269299 (-) True G774675
TU882724 lncRNA downstream 35583 15249229 ~ 15250300 (-) True G774673
TU882518 lncRNA downstream 49414 15164072 ~ 15236469 (-) True G774523
TU882689 lncRNA downstream 54848 15159121 ~ 15231035 (-) True G774641
TU882684 lncRNA downstream 68647 15155093 ~ 15217236 (-) True G774636
TU882789 lncRNA upstream 91007 15405502 ~ 15408709 (-) True G774728
TU882833 lncRNA upstream 192837 15507332 ~ 15507668 (-) True G774767
TU882781 lncRNA upstream 244962 15559457 ~ 15561311 (-) True G774720
TU882877 lncRNA upstream 268518 15583013 ~ 15583220 (-) True G774807
TU882885 lncRNA upstream 278166 15592661 ~ 15592872 (-) True G774815
XR_005053189.1 mRNA downstream 259 15284311 ~ 15285624 (-) True LOC118966001
XM_036987407.1 mRNA downstream 4012 15270190 ~ 15281871 (-) True LOC110531571
XM_021614809.2 mRNA downstream 4217 15270190 ~ 15281666 (-) False LOC110531571
XM_021614810.2 mRNA downstream 6967 15270190 ~ 15278916 (-) False LOC110531571
XR_005053187.1 mRNA downstream 17161 15264226 ~ 15268722 (-) True LOC110531572
XM_036987416.1 mRNA upstream 64834 15379329 ~ 15436702 (-) True LOC110531568
XM_021614858.2 mRNA upstream 124011 15438506 ~ 15454318 (-) False rbm14b
XM_021614860.2 mRNA upstream 124011 15438506 ~ 15454318 (-) False rbm14b
XM_021614859.2 mRNA upstream 124012 15438507 ~ 15454316 (-) False rbm14b
XM_021614856.2 mRNA upstream 124012 15438507 ~ 15454318 (-) False rbm14b
TU882572 other downstream 31910 15238058 ~ 15253973 (-) True G774562
TU882399 other downstream 561361 14724054 ~ 14724522 (-) True G774427
TU882202 other downstream 1031726 14249401 ~ 14254157 (-) True LOC118966145
TU881137 other downstream 1298301 13980328 ~ 13987582 (-) True LOC110531538
TU880908 other downstream 1586555 13697179 ~ 13699328 (-) True G773168
TU882761 other upstream 37812 15352307 ~ 15361319 (-) True G774702
TU883038 other upstream 310707 15625202 ~ 15625920 (-) True G774954
TU883145 other upstream 467862 15782357 ~ 15787606 (-) False LOC110531603
TU883264 other upstream 547825 15862320 ~ 15863834 (-) True G775139
TU883736 other upstream 598341 15912836 ~ 15913294 (-) True G775532

Expression Profile