RNA id: XR_005053190.1


Basic Information

Item Value
RNA id XR_005053190.1
length 1543
RNA type mRNA
GC content 0.54
exon number 10
gene id LOC110531592
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 15553474 ~ 15569492 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgTTATTTTGACCCCGCCCACATTTCAAATTACTGAAGGAAGAAGAATACAGTTGCTGTAGCTCCTATATGCATTTTGCATTAATATTTTCCGCATGTTTTCAAAGTAATCAAAACGTGTTGCTTAATTGGATTATCCCACCTGAGAGCCCCGGCTGGAGGGAACAGATTgagatcctctcctctccagcagCATCAGTGGACCATGGATAGTGAGGGCAGAAAGGTTGTCGTCTGTGACAATGGCACAGGGTTTGTCAAGTGTGGCTTCGCTGGCTCCAACTTCCCAGAGCATATCTTCCCTGCCTTGGTGGGTCGGCCCATCATCCGGTCAAACACCAAAGTTGGAAACATCGAGATTAAGGACCTGATGGTGGGTGACGAGGCCAGTGAGTGTCGCTCCATGCTGGAGGTGTCCTACCCCATGGACAACGGCATGGTGCGCTCCTGGGAAGACATGCTTCACCTGTGGGACTACACCTTCGGCCCCGAGCGCCTGGACATCAGCCCCCCAGACTGCAAGGTGCTTCTGACGGAACCGCCCATGAACCCCACTAAGAACCGTGAGAAGATCGCTGAGGTCATGTTTGAGACCTACCAGTTCCACGGCATCTACGTCGCCATCCAGGCCGTGCTCACTCTCTATGCCCAGGGTTTGTTGACAGGCGTGGTTGTGGATTCGGGGGACGGGGTGACCCATATATGTCCTGTGTACGAGGGCTACTCTCTACCCCACCTCACACGCAGGCTGGACATCGCTGGACGTGACATCACACGCTACCTCATCAAGTTGCTGTTGCTGCGTGGCTATGCCTTTAACCACTCGGCTGACTTTGAGACGGTCCGCATGCtgaaggagaagctgtgctatgTGGGATACAACATCGAGCAGGAGCAGAGACTGTCTACAGAGACCACCGTGCTGGTGGAGTCATATATGCTGCCTGACGGTCGTCAGGTGATGGTGGGAGGGGAGCGGTTCGGAGCACCAGAGGCCCTCTTCCAGCCCCACCTCATCAACGTAGAGGGTGCAGGCGTGGCTGAGCTGCTGTTCAACACCATCCAGGCTGCTGACATAGATCTCAGGTCTGACTTGTACAAGCACATTGTTCTGTCAGGAGGCACCACTATGTACCCCGGCCTTCCCtccagactggagagagagatcaaACAGCTGTACCTGGAGAAGGTGCTGCAGGGGGACACTGAGAAACTTtctAAGTTTAAGATCCGCATTGAGGACCCCCCAAGCCGTAAACATATGGTGTTTATGGGTGGAGCGGTGCTGGCCAACATCATGAAGGACAAGGAGTCCTTCTGGCTGAGCCGGGCTGACTACCTGGAGAAAGGCCTGAGGGTTCTGGACAAACTGGGGTGTGGCGTGAAGTAGAGGTGAAATAGAGGTGGTTAGCTagggtcccacacacacacacacacacacccacccacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacgcacacacacacaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU882833 lncRNA downstream 45806 15507332 ~ 15507668 (-) True G774767
TU882789 lncRNA downstream 144765 15405502 ~ 15408709 (-) True G774728
TU882738 lncRNA downstream 245657 15306350 ~ 15307817 (-) True G774683
TU882735 lncRNA downstream 267556 15284319 ~ 15285918 (-) True G774681
TU882726 lncRNA downstream 284175 15269030 ~ 15269299 (-) True G774675
TU882877 lncRNA upstream 13521 15583013 ~ 15583220 (-) True G774807
TU882885 lncRNA upstream 23169 15592661 ~ 15592872 (-) True G774815
TU882888 lncRNA upstream 31374 15600866 ~ 15601141 (-) True G774818
TU882890 lncRNA upstream 32466 15601958 ~ 15602197 (-) True G774820
TU882869 lncRNA upstream 33956 15603448 ~ 15603973 (-) True G774799
XM_021614864.2 mRNA downstream 91121 15454410 ~ 15462353 (-) True LOC110531589
XM_021614857.2 mRNA downstream 99155 15438507 ~ 15454319 (-) True rbm14b
XM_021614858.2 mRNA downstream 99156 15438506 ~ 15454318 (-) False rbm14b
XM_021614868.2 mRNA upstream 143 15569635 ~ 15578714 (-) False LOC110531593
XM_021614869.2 mRNA upstream 143 15569635 ~ 15578714 (-) True LOC110531593
XM_036987420.1 mRNA upstream 25642 15595134 ~ 15599951 (-) True b4gat1
XM_021614881.2 mRNA upstream 35538 15605030 ~ 15608388 (-) False LOC110531598
XM_021614882.2 mRNA upstream 36313 15605805 ~ 15608653 (-) True LOC110531598
TU882761 other downstream 192155 15352307 ~ 15361319 (-) True G774702
TU882572 other downstream 299501 15238058 ~ 15253973 (-) True G774562
TU882399 other downstream 828952 14724054 ~ 14724522 (-) True G774427
TU882202 other downstream 1299317 14249401 ~ 14254157 (-) True LOC118966145
TU881137 other downstream 1565892 13980328 ~ 13987582 (-) True LOC110531538
TU883038 other upstream 55710 15625202 ~ 15625920 (-) True G774954
TU883145 other upstream 212865 15782357 ~ 15787606 (-) False LOC110531603
TU883264 other upstream 292828 15862320 ~ 15863834 (-) True G775139
TU883736 other upstream 343344 15912836 ~ 15913294 (-) True G775532
TU884559 other upstream 1257561 16827053 ~ 16828523 (-) False LOC110531626

Expression Profile