RNA id: XM_021614869.2


Basic Information

Item Value
RNA id XM_021614869.2
length 3916
RNA type mRNA
GC content 0.46
exon number 3
gene id LOC110531593
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 15569635 ~ 15578714 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGCGTTCATTCTTTAGCCTACTAGAACGGCCTGAACTCCTGGAAGCGCATGACCCCGCCACGAATCTTCTCACATATAGCATAGCTCGCCAATACCGGGAAAAGAGGAGACACAACTTATATAAGCAACTCGCTACCAATCAGATTTAGTTTGGTGTCTTTTTCCACTGCAAAACTAGGCCTATATTTGACTCAACTGAACTTTCACATCACTCTGTAGGCGCACGGTGACCGTGGTGCGTAAAAGGACACTTCCAGCGCGTTTTGCTTCATCGGTCTACGGTCTCTTTTCTACGGTCTCTTTATTTGAACACGCCCCAGGCAGCTGGAATGATATGACCATTGGCCATGTCCATTTAGCAAATTTAGACTATTTTGTTTGTTGACAAAGTCTGAGAACAACGAAATATGTTTCCTCTGCCTATGTTCACCCCGGAGCAAGTGGCTCGGGTGTGCGAGAACCTCGAGGAGACCGGCGACATCGAGCGCCTTGGGCGGTTCTTATGGTCCCTGCCTGCCGCTGTCCCTGGCTCCGCGGGGGAGGCTCTCAACCGCCACGAGTCAGTGATGCGCGCCAGGGCGCTGGTTGCCTTCCACGGAGGAAACTTCGAGGCGCTTTACCAGATCCTCCAGAGCCACCGCTTTACGCGAGATTCTCACGCCAAGCTCCAAGATCTGTGGCTGGATGCGCACTACCGCGAGGCGGAGCGGCTCCGAGGCCGTGCCCTGGGACCCGTGGAGAAGTACCGCATCCGAAAGAAGTTCCCCCTGCCTCGCACCATTTGGGACGGCGAGCAGAAGACGCACTGCTTTAAGGAGAGAACTCGCAGCCTGCTCAGAGAGTGGTACCTCCAGGACCCGTACCCAAACCCGTCCAGGAAACGGCACCTGGCCCAGGCCACGGGACTCACACCCACACAGGTCGGCAACTGGTTCAAGAATCGAcgccagagagacagggctgcaTCGGCAAAGAACATactGCAGCAGGACCCCACCCACCTGCCTTCCGAAAGCTCCCCTGAGGGTTCTGCCCAGGAGCATCACGCCCACCACCCCCGCCTGCTGGCCGCCTCTCCGCGTCACCCGGGCAGCCCAGAGGCCAGCGACTGCAGCACGAGCACCGACCCCCGGGGCACTGGCACCTCCACCCCAGACCACTCCGTTAGCAGCGACAGCGAGTTCGAATCCTGAGGGTCGGGTCACTGACCACAGCAGGAGAGAGGCTCTCATTGGTTAATTAAATCCTGAAGAGAGAGGCTGTCATCAGTTCTCAGCCAGGAAGGACCGACCCCACAGATATATAGAGACAATAGACACTGTAGAACTACTATGTCTGTAGCTTGAGATTGGACACTTGGACAGGAAGTTCTCTATGAGAGACTTGATATGGACACTTGATATGGTTGCTAGTGGACGaatggggaggggtgggggattGGGAATTAGACCATCTACAAACACATGCACTTAAAATGCACCATCGCACATGACTGTAAGGTAAACTGTTACTAAGTACCGTATGACTGTACTGCTGACTGCTATAAAAACCCACTACAATTCTGTGTTCTGTAGATTTGGACTGGAACGTGGGTCAGCAGCGATAACATATTCTAGGACAGCAATAACTATTCTCAGGCACGTTATTTATAGAAAGAATATAAACATACAAAGTCGTAGAGTAATTACTGAGCTTGAATTATAATATTATATGTTTTGATACTTAATGGTTTCAACTCATCGGGGGTCTATTTTTGAGTAGTCGATCATTGAGCGTTAGCTTTAATCCCATTTCTTAATTAGCCCCTTACAATGACCACTGCCTTCTGTAGGCTGTTGGTTTCCTACATGATCTGTCGTTGGTGGACGCAAAACTGCTTGATTGGATTGGACAGGTCTGCATTTCTCTTCATACACGTCACTGCCTTAAGAAGGAAGTATATTGGCATCAGGGCCCCAATCTTCTAGTTTGGCTAACATTAGGCACCGTTGCAGACCATAACTGTCTCTAAAGCTAACACAGCCTAAAAAAATGGTCTCTAGACAATCTTGTAATGCATGGATAAAGACATTACATGGTGgtttaaatgttttcctgtaTTATGATAATGCGACTACTGTATAACAATGTTGATGTGTATCCAAAACATCCTCATTCTAACATTATCCAGTTCAAACCTGTTATATCCTTTTAGACTGTGGTTTGAGGCATCTTTCAGTGTGGAATCCTCTGTGCAGATTTCACTAGAGATGTCCTTGCAGGAATTGCCTGTCAGAGCAAAACAAAGTAAGTGGGATAAAAATGAAAGCAAGGTTGATAAAGTGAAGCACAACTTGGTCTTAACTCATTGATGTGCCTATAAACGTTTATGGACTGAATGACCTGTTTAACATGATCGTTTCaactttatatatttttaatttaaccaggaaaatcagctaagaacaaattcttatttacaatgacggcctaccggggaacagtaggttaactgccttgttcaggggcagaaccacagatttttaccttgtcagctcggggattcgatcctgcAACcactcggttactagtccaacgctctaacccagGAGTGGGAAATTCCAGTCTCCGAGGacttgattggtgtcacagttttgcaccagccccagctaacacaacTAACTCCAATAATCACTTAATCACGATCTTCATTGATTCATCAGCTGTGTttactagggatggagaaaaagtgtgacaccaatcaagccctggaggactggagttgcccacccctggtctaaccactaggctacctgccaccccatatagGCCTACCCATATAAATATCACCATACAATACATCGTCATGGGATTCATTCttagaaaaataagtattttgtaaAAATGTGTCTGATGTATGCATTTGGAATAAATGAAAGTATTTTTATCCAAACCTGCTGAAGTCTGTGAACAACGAGTCCACAAGTGTTTCCAGGATTGAACCATATTGTTTGTTTGTTCGGGAGGGGGGCTCATATGCATTGTGTTTTCTGACAAATAATTTGCTGAACTCTAAACCTTATCTAAATCTTAGAATTAATAATGTTACAaatgaggagactaaactgcatATTGATGCAACGGTTGccaagatggggagaggtctgtccctGACCAAGCACAActctgctttcttgacatcaCAATCAACCAATCAAGTCCTAGTTTTATCACACCTGGACTACAGCCCAGTTATTTGATCAAGTACTGCAAAGAAGGACATAGAGAAATtacagttggcccagaacagagcagcccAGCTGGCCCTTCAATGTACACAGAGggctaataacaacaacatgcatgtcaatctctcctgactCAAAGTACTGTAGAGGAGAGGTTGACTGCATCACtacatgtctttgtgagaggtattgatgtgttgtcagcactgagctgtctgtccaaacgactagcacacagctcataCCCCACAAGACTTCTTCACAGcccccaaatccagaacacagGCTAGGAGACgcacagtactatatagagccatgactacatggaactctcttctGCATCAAGTAACTCAAGCGACCAGTAAAATGTTACTTAAAAACAGATATAAACAAAATACACCTCATGGAACAGCATGGACTGtgaagacacacacgcacgcacacacacacacacagatatactcTACAATCAGACACACATTGTGATATTGTACATTTTAAATTGTAAATGTGTAATATAGGAGCAATATACATTTGTATAAAGCACAGGGTCTTGAatgatgtattgttttattatgaTGTATTGTTATAACTCTGGTTGGActccaggaagtgtagctgctgctgctaattgggatcctaataaaatactaaatatgtGCTGGTTTCTAAAGGCTTACGACAACTA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0048596 embryonic camera-type eye morphogenesis biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K19473 SIX3_6, OPTIX; homeobox protein SIX3/6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU882781 lncRNA downstream 8324 15559457 ~ 15561311 (-) True G774720
TU882833 lncRNA downstream 61967 15507332 ~ 15507668 (-) True G774767
TU882789 lncRNA downstream 160926 15405502 ~ 15408709 (-) True G774728
TU882738 lncRNA downstream 261818 15306350 ~ 15307817 (-) True G774683
TU882735 lncRNA downstream 283717 15284319 ~ 15285918 (-) True G774681
TU882877 lncRNA upstream 4299 15583013 ~ 15583220 (-) True G774807
TU882885 lncRNA upstream 13947 15592661 ~ 15592872 (-) True G774815
TU882888 lncRNA upstream 22152 15600866 ~ 15601141 (-) True G774818
TU882890 lncRNA upstream 23244 15601958 ~ 15602197 (-) True G774820
TU882869 lncRNA upstream 24734 15603448 ~ 15603973 (-) True G774799
XR_005053190.1 mRNA downstream 143 15553474 ~ 15569492 (-) False LOC110531592
XM_021614867.2 mRNA downstream 143 15562616 ~ 15569492 (-) True LOC110531592
XM_021614864.2 mRNA downstream 107282 15454410 ~ 15462353 (-) True LOC110531589
XM_021614857.2 mRNA downstream 115316 15438507 ~ 15454319 (-) True rbm14b
XM_021614856.2 mRNA downstream 115317 15438507 ~ 15454318 (-) False rbm14b
XM_036987420.1 mRNA upstream 16420 15595134 ~ 15599951 (-) True b4gat1
XM_021614881.2 mRNA upstream 26316 15605030 ~ 15608388 (-) False LOC110531598
XM_021614882.2 mRNA upstream 27091 15605805 ~ 15608653 (-) True LOC110531598
XM_021614883.2 mRNA upstream 87776 15666490 ~ 15678852 (-) True mfap3l
XM_036989260.1 mRNA upstream 105925 15684639 ~ 15688747 (-) True LOC118966163
TU882761 other downstream 208316 15352307 ~ 15361319 (-) True G774702
TU882572 other downstream 315662 15238058 ~ 15253973 (-) True G774562
TU882399 other downstream 845113 14724054 ~ 14724522 (-) True G774427
TU882202 other downstream 1315478 14249401 ~ 14254157 (-) True LOC118966145
TU881137 other downstream 1582053 13980328 ~ 13987582 (-) True LOC110531538
TU883038 other upstream 46488 15625202 ~ 15625920 (-) True G774954
TU883145 other upstream 203643 15782357 ~ 15787606 (-) False LOC110531603
TU883264 other upstream 283606 15862320 ~ 15863834 (-) True G775139
TU883736 other upstream 334122 15912836 ~ 15913294 (-) True G775532
TU884559 other upstream 1248339 16827053 ~ 16828523 (-) False LOC110531626

Expression Profile