RNA id: XM_021614879.2


Basic Information

Item Value
RNA id XM_021614879.2
length 3810
RNA type mRNA
GC content 0.54
exon number 13
gene id clcn3
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 15611575 ~ 15660094 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cacacacacatcgtcactcacgcacacacacagtcacaaataAGCCTACGCACACAGCCCGCTACACTATTCGTGGCTGCTGTAAATCATGGAGGCTGCCTCCATAGTAAACAGTTCGCCTAGAGACGTGTAGCTAACGCGCAGTGAGAGAGCTAACGTAAGCTTAGCGACCAACTGTCAGTCAACCATGGAGGATATCTCAGCTGAGACCGACCCCTATCTCCCTTACGACGGGGGAGGGGATACCATTCCCCTGCAGGAGCTGCCTAAAAGAGgaTCTAACTACGTCATGTCTAACGGGGGAGGGGTGCTGAGCAGCACCACCCACCTGCTGGACTTCCTGGAGGAGCCCATTCCGGGGGTTGGCACCTACGACGACTTCCACACCATCGACTGGGTCCGGGAGAAGTGCAAGGACCGGGAACGCCACCGCAAGatcaaCACTAAGAAGAAGGAGTCTGCGTGGGAGTTCACCAAGAGCCTGTATGATGCCTGGTCTGGTTGGCTGGTAGTGACGCTGACAGGACTGGCCTCAGGTGCCCTGGCGGGTCTGATCGACATCTCTGCTGATTGGCTGAACGACATCAAGGAGGGGGTGTGTCTGAATGCCATGTGGTTTAATCACGAGCAGTGCTGCTGGGGCTCCAACGAGACCACTTTCGCTGAGAGGGACAAGTGTCCTCAGTGGAAGAGCTGGGCGGGGCTCATCCTGGGCCAGGAAGAGGGTCCTGGTTCCTACATCATGAACTACTTCATGTACATCTACTGGGCTTTGTCCTTTGCCTTGCTGGCTGTGTTACTGGTTAAGGTGTTCGCCCCCTACGCCTGTGGCTCAGGCATACCTGAGataAAGACCATCCTGAGTGGGTTCATCATCCGGGGTTACCTGGGGAAGTGGACCCTGCTGATCAAGACGGTGACCCTGGTGCTGGCTGTAGCGTCTGGGCTGAGCCTGGGGAAAGAGGGACCCCTGGTCCATGTGGCCTGCTGCTGTGGAAACATTTTCTCATACCTCTTCCCCAAGTACAGCAAGAACGAGGCCAAGAAGAGAGAGGTCCTATCTGCAGCATCAGCAGCTGGGGTGTCTGTGGCTTTTGGTGCTCCCATAGGAGGAGTACTCTTCAGCTTGGAGGAGgtgagcTACTACTTCCCTCTGAAGACTCTGTGGCGCTCCTTCTTCGCTGCGCTAGTGGCAGCCTTCGTCCTCCGCTCCATCAACCCGTTTGGCAACAGCCGTCTGGTCCTGTTCTATGTGGAGTACCACACCCCCTGGTACCTGTTTGAGCTTATCCCCTTCATCCTGCTGGGGGTGTTTGGAGGCCTCTGGGGGGCCTTCTTCATCAAGGCCAACATCGCCTGGTGCCGAAGGAGGAAGTCCACCCGCTTCGGGAAATACCCCGTCCTGGAGGTCATCTTCGTGGCAGCCATTACCGCCGTGGTGGCGTTCCCCAACCCCTACACGCGACAGAACACCAGCGAGCTGATTAAGGAGTTGTTCACTGACTGTGGGCCGCTGGAGTCGTCCCAGCTGTGCCAGTACAGGAGTCAGATGAATGGGAGTAAGGCGTTTGGGGATGCGTCGCCTAACAAGCCGGCGGGGCCCGGGGTCTACACAGCCATGTGGCAGCTGTGCCTGGCGCTCGTCTTCAAGATCATCATGACAATATTCACCTTCGGACTCAAGGTTCCGGCAGGCCTATTCATCCCCAGTATGGCCATCGGGGCGATCGCCGGGCGGATTGTTGGCATCGCCGTGGAGCAGCTGGCGTACTACCACCATGACTGGTTAGTGTTCAGGGAGTGGTGCGAGGTAGGCACCGACTGCATCACCCCGGGACTCTATGCCATGGTGGGGGCCGCTGCATGTCTGGgtgGTGTGACGAGGATGACCGTGTCTCTCGTGGTTATTGTGTTTGAGCTGACTGGCGGTCTGGAATACATTGTGCCCCTCATGGCGGCCGTCATGACCAGCAAGTGGGTGGGCGACGCCTTTGGGCGTGAGGGCATCTACGAGTCACACATCCGCCTCAACGGGTATCCTTTCCTGGACGCCAAGTCAGAGTTCACACATACCACACTGGCGCGGGAGGTGATGCGCCCGCAGCGTAGTGATCCGCCGTTAGCGGTGCTGACACAGGACGACCTGACGGTGGAGGAACTCCAGGTGATCATCAACGAGACCAGCTACAATGGCTTCCCTGTCATCGTCTCCAAGGAGTCTCAGAGACTGGTGGGCTTCGCCCTGCGCAGGGACATCACCATCGCTATAGaAAACGCACGGCGAAAGCAGGAGGGTATCCTGCTGACCTCGCGGGTCTACTTCACGCAGCACGCCCCCACCCTGCCCGCCGACAGCCCGCGGCCCCTCAAGCTGCGCTCCATCTTGGACATGAGCCCCTTCACCGTCACTGACCACACGCCCATGGAGATAGTGGTGGACATCTTCCGCAAGCTGGGACTTCGCCAGTGTCTGGTGACACACAACGGGCGTCTCCTTGGTATTATCACAAAAAAAGATATCCTTCGTCATATGGCCCAGTTGACCAACCAAGACCCCGACAACATAATGTTCAACTAGTCACCTCCTTCCCAGGTCGTcacgatgatgaggaggagagcgaggaggaggTTGTGCACCTACTGGAGGGTCGAGGCTCCTCTCTATGacaaacagccccccccccccccgaccctcccacccccccaccccatggAACCCTGTCCCTAACCATAGTGACTGAGAGCCCTAGTGCCTAGGGACCCTCCCACAGAGCCCTAGTGGCCACAGGAAGGTAGAGACGGCCAGATTAAAGGGATATTAAATGGCTGTTTTTGAAGGATGTTCCGGCCACAAAGTCGCAGCTACTACGGACTGGGACATATATACCCAAGCAACAcacttttaacacacacacacacacacacacatacaggagcTCACACTCACTCATACAAACACAGATGCCAGACAAGAGCACACACTTGACCAATTTgacctcctacacacacacacgcacacacaccttcatGCTCCTCCACCCATGTCCTATTCCTATTGGTTTATACTAGCAGACATTGCTGTGAGCCTGATGCCTGGCTGCCAGGGTGAGACGTCAGAATGATACTCTAGGACACAAGGAGGGACCTTCAGACACGCCAATTGGCTGTCTGCCAGATGCCCTGCCAGGCTCCGACCCCACTGTGTCCCTCCCTCACACCCCGTCCATCCTCAAAATAATTGTTTACCTGGGAACTGTGTGTGAGAGCAATCAAGAGTGCTTATGTGTGTGTCACGAGCACCTCAACATTCCATTCAGGTTGTTATAGTAACCCCCCTAAAGACAACCCTTGTCTTGATATTAGACTGGGCCTCGATCCAAGGGAGATTTGCTTTAAtgtgtgagaaggagagagagctagagggttGTCAAGGATACAAGCAGGATGTACTGTAGTAGTTAGTTCATGTCTGAGTGTATGGATGTGTGTTGTAGTTCAGTATGTGAAAACAGATGCAGTGTTGTACAGAAGAGTCTGATACTCATCAGTTACTCCCTGTTGAACTAAATAACTGTGTGAGCATGTCCCATTAGGATGGAGACCTAGCAACACTCCGACAGTGAAGGTGGGGAGAGAATATATTAAAAGGTTGAGTTACTCTAACTggagaagttttttttttttactattgcTATTACGTTTAGTATTGATATCTGCAGTCAAGTAACGAGACAAAGTCAAGACTGGAGAACTGCACTTTTTTCTTTCCAAGTGAACAACATAAATGATGATGTCGATGGTAATACTGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU882916 lncRNA upstream 2307 15626342 ~ 15626725 (+) True G774841
TU882915 lncRNA upstream 3451 15625316 ~ 15625581 (+) True G774840
TU882904 lncRNA upstream 11147 15611798 ~ 15617885 (+) True clcn3
TU882039 lncRNA upstream 43658 15585175 ~ 15585374 (+) True G774121
TU882038 lncRNA upstream 44054 15584767 ~ 15584978 (+) True G774120
TU882937 lncRNA downstream 24283 15684377 ~ 15684590 (+) True G774861
TU883123 lncRNA downstream 115708 15775802 ~ 15776078 (+) True G775031
TU883133 lncRNA downstream 132756 15792850 ~ 15793446 (+) True G775038
TU883154 lncRNA downstream 134799 15794893 ~ 15795104 (+) True G775055
TU883166 lncRNA downstream 142108 15802202 ~ 15820495 (+) False G775063
XM_021614880.2 mRNA upstream 17509 15608430 ~ 15611523 (+) True nit1
trnas-gcu-6 mRNA upstream 24633 15604318 ~ 15604399 (+) True trnas-gcu-6
XM_036987417.1 mRNA upstream 67696 15523556 ~ 15561336 (+) False si:ch211-168d1.3
XM_036987418.1 mRNA upstream 67696 15529030 ~ 15561336 (+) True si:ch211-168d1.3
XM_021614865.2 mRNA upstream 123389 15471215 ~ 15505643 (+) False LOC110531590
XM_021614890.2 mRNA downstream 31991 15692085 ~ 15697823 (+) False ino80b
XM_021614891.2 mRNA downstream 31992 15692086 ~ 15697818 (+) True ino80b
trnav-uac-14 mRNA downstream 460870 16120964 ~ 16121036 (+) True trnav-uac-14
trnav-uac-15 mRNA downstream 469636 16129730 ~ 16129802 (+) True trnav-uac-15
trnak-cuu-3 mRNA downstream 472710 16132804 ~ 16132876 (+) True trnak-cuu-3
TU881932 other upstream 127956 15471507 ~ 15501076 (+) False LOC110531590
TU881976 other upstream 163408 15465360 ~ 15465624 (+) True G774065
TU881923 other upstream 251844 15375224 ~ 15377188 (+) True G774021
TU881866 other upstream 329818 15298458 ~ 15299214 (+) True G773983
TU881409 other upstream 1244866 14382670 ~ 14384166 (+) True G773601
TU883269 other downstream 205995 15866089 ~ 15866708 (+) True G775142
TU883454 other downstream 526182 16186276 ~ 16187450 (+) True G775306
TU883480 other downstream 577280 16237374 ~ 16239534 (+) False LOC110532936
TU883479 other downstream 577361 16237455 ~ 16239534 (+) False LOC110532936
TU883488 other downstream 577361 16237455 ~ 16239758 (+) False LOC110532936

Expression Profile