RNA id: XM_036989260.1


Basic Information

Item Value
RNA id XM_036989260.1
length 516
RNA type mRNA
GC content 0.54
exon number 6
gene id LOC118966163
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 15684639 ~ 15688747 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGATCTCCCTGGCCGGAGGGGCTCCCAACACCTTCCCCTTCCAGTCCTGCTCCATCCAGGTGAAGAATGGGGACAGAATGGTTTTTGAAATGCTTGTCAATCCTGGAGACGGTCTACTCCACGCATCTACCTACTCTGGAACTCTCGCTGCAGTAAGAAgcacttctctttctctcacaaacactcctggtgaCCAGCACGGTATGATCCTGGGGGGTCTGAAGGAGGTGCTGTCCCAATGGGACCTGGCAGATGTCCACAAGCCAGACAGCACCGTACCCAGGGTCCTCTACACCATCCCCAATGGAGGAAACCCCACCGGGGCCTCCTTGACCAcccagaggaagagggagatctTCAAGCTTGCCAGACAGTATGACCTCCTTGTTATCGAGGATGACCCCTATTACTTCCTACAGTTTGAAAAGGCTGCtcCTCCCACGTTTCTCTCCATGGACGTTGACGGGGGGATCATCAGGACAGACTCCTTCTCAAAGATCCTGTCGTTATGGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU883008 lncRNA downstream 22784 15658774 ~ 15661855 (-) True G774924
TU883017 lncRNA downstream 30233 15651030 ~ 15654406 (-) True G774933
TU883047 lncRNA downstream 49417 15634436 ~ 15635222 (-) True G774960
TU883044 lncRNA downstream 52858 15630695 ~ 15631781 (-) False G774959
TU883070 lncRNA upstream 2732 15691479 ~ 15691679 (-) True G774983
TU883079 lncRNA upstream 22699 15711446 ~ 15713654 (-) False G774989
TU883080 lncRNA upstream 22699 15711446 ~ 15712890 (-) True G774989
TU883095 lncRNA upstream 39938 15728685 ~ 15732759 (-) True G775003
TU883120 lncRNA upstream 84820 15773567 ~ 15773801 (-) True G775028
XM_021614883.2 mRNA downstream 5787 15666490 ~ 15678852 (-) True mfap3l
XM_021614882.2 mRNA downstream 75986 15605805 ~ 15608653 (-) True LOC110531598
XM_021614881.2 mRNA downstream 76251 15605030 ~ 15608388 (-) False LOC110531598
XM_036987420.1 mRNA downstream 84688 15595134 ~ 15599951 (-) True b4gat1
XM_021614868.2 mRNA downstream 105925 15569635 ~ 15578714 (-) False LOC110531593
XM_021614885.2 mRNA upstream 9075 15697822 ~ 15739778 (-) False intu
XM_021614884.2 mRNA upstream 9075 15697822 ~ 15739780 (-) False intu
XM_021614887.2 mRNA upstream 9075 15697822 ~ 15740853 (-) False intu
XM_021614888.2 mRNA upstream 9075 15697822 ~ 15740853 (-) True intu
XR_005053464.1 mRNA upstream 54595 15743342 ~ 15743550 (-) True LOC118966198
TU883038 other downstream 58719 15625202 ~ 15625920 (-) True G774954
TU882761 other downstream 323320 15352307 ~ 15361319 (-) True G774702
TU882572 other downstream 430666 15238058 ~ 15253973 (-) True G774562
TU882399 other downstream 960117 14724054 ~ 14724522 (-) True G774427
TU882202 other downstream 1430482 14249401 ~ 14254157 (-) True LOC118966145
TU883145 other upstream 93610 15782357 ~ 15787606 (-) False LOC110531603
TU883264 other upstream 173573 15862320 ~ 15863834 (-) True G775139
TU883736 other upstream 224089 15912836 ~ 15913294 (-) True G775532
TU884559 other upstream 1138306 16827053 ~ 16828523 (-) False LOC110531626
TU884558 other upstream 1138427 16827174 ~ 16828561 (-) False LOC110531626

Expression Profile