RNA id: XM_021614884.2


Basic Information

Item Value
RNA id XM_021614884.2
length 4499
RNA type mRNA
GC content 0.54
exon number 17
gene id intu
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 15697822 ~ 15740853 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAGCTTCCATGTTGTCAGGGAAACGTGAACATCAGCCAACCACACTGAGACAATTTGCGTCACGTGGCATAGTTGAAGAGCCCGTATGCAGACAACATGGCGATAGACTGCCGATGCTCACAAAGTAGAAAGTAGCTCAAACGTATTAGCTTTAAGTTTAGAGTTATGACCGGTATCATCTTGTCGAACACATTTAACGAATGGAATTATGACTACTAAAGATTATAGCGGGACGCTCGAGCCCCATGCAGCAGCGTGTAAGCACCCGAGACGGGAGGGCGACGACAGGGAGGAACTGCATGACAACGGGAATGATAGTGAATCAACATCATCAAGTTACAGTCAGTCCGACTACTCCGACGACCTAGAGCCAGAATGGCTGGACGACGTCCAGAAGAACGGCGAGCTCTTCTACCTGGAGCTGAGCGAGGGCGAGGAGGAGGCGGCATTAGCTCAGGCCGCCGCCAATAATGGCCTCCCCACCAATCACGTGCACTTCAGTGAGAAGGAGGCGGAGATCATCAGCGAGGAGTGCAGGAAGCGTTCTGATGGCACTCCAACCAAAGGAGAGCCCAAGCTGAAAAGACTTGCCAGGATCCTACGGAGGAAGAGGCGGCCATCCCAGCGGAGTGGGCCCGACGGAGGAGCCAAAGACTCGTCATCGCTTCCAACGTCCATCTTGAAAAACCAGGCGGGGCAGAGGGCGGGGCTGGTGGTCCAGCAGCAGCATCTGAAAGAGGTGTGTGTCTACCTGAACCCCAAACGGCTGGGCAGCTGCTCACCTCCTCCCCCGGAGAGAGGGGGTCTACTGGAGGCTCTGCTGGGGGTGGTGCATCGCTCGTCCTGGGGCCAGGGAGACCCtgcaggggggagaggggagaggatcaCCGTCCACGGCCTGGTGCCCAACAGCCCCGCCATCAAGTGTACACAGATACTGATCGgTGATGACCTAGTGGCAGTGGACGATGTGGATGTTACCACAGAGAACATTGAGAGGGTTCTCTCCTGCATTCCTGGGCctacacagGTGAAACTGACCCTGGTGACAGCCAGTGCAAGAGGACCAGGGGAGGGGGGTGTGGACGTGTCCTCTGCCCCCAGGCTCAGGCCCTCTCCCCCGGTCAGCCAGCTGGTGCGTCTGCTGTGGGGCGAGGACACGGTGGAGCTCCAGATGTCTATAGGACACATCCCTCACATCGTCATGTACCTGTCACTCAAACTGGACTCAGACTCCCCCCTGGAAGAGCAAGAGATCCTGTACCAGTACCCTGTTTCTGAGGCGTCCAGCCAGCTGAAGGGAGTCCGAGGGATCTTCCTCACTTTGTGTGACATGCTGGAGAATGTCACCGGGGGACAGATAGTCAGCTCGTCTCTGCTGCTCCGTAAACAGCTGGTCCATGTGGGCTACTGGAAGGAGAGCAACAACCTGCTGGTGATCGGCCTGCCTGCTGAGAGGgttcctctgctctctctgcagACGGTAGTGGGAGGTGTGGTCAGGACTCTCAACGTGATGTATGGCTCTCTGGGCAGtgCATTTTGCCAGGTGGACCACGCTCCCAGACTGGACCATTTCTTCTGCCTGTTCTTCCAGCAGCTGATCCACCCCTCCAGGTTGAGTGGCAGCTCCGTGGCCACGCCCCCTGATGTCTCGGAGACTCTCTTCCTGGACGGACTGCCGGCGGTCCGATGGCTCACCCTGCCTCCTGAGATAAAGATGGAGGTTGACACTGTTCTCTCAGACTTTGAATCGTCAGATTTTGGAGAAATGtcagaagACTTCTATGGCATGAGGCGTCTCTACGTGACGCTGGGCTCCTGTCTGTTCTACAAGggCTACCTGATAGCCAACCACCTCCCCAAGGAGGACCTGCTGGATGTTTGTCTGTACTGCCAGCACTACTGTCTCCTCCCCCTGGCAGCAGAGCAGCGCGTGGGCCAGCTGGTCATCTGGAGAGAGGTGTTCCCACAACATCGCACCCAGAACACCCAGACACAGACCAATAACAACCACTGTACCAGGCCCGGCTACTGCCAGCCACAGGGACGCTACTTCCTGCTCATAGTGGGACTGaGGCATTTCATGCAGTGCGTCCTCCTGGAGGCAGGGGGCTGTGCGTCCCCTGCCCTGGGGGCCCCGGGACCTGACTGTGTGTACGTGGACCAGGTCAAGGCCACCCTCCTGCAGCTGGAGGGGCTGGACGTAGGGGTGGAGGAACGCCTGGCCGCCCCGCCCGCACCCTGCCTCTCTTGTGCTGACTggttcctcccctcctctgcccgGGACAGGTTGGACACCATGGCTGCATCGTCCCCTGTCCTCAGTAAGCTGACTGGGGCTGTGAAGCCACCGTCCTCCAcccagggaggggggaagggagtgGGCAGGAGCCTCTTCGGAGGGGGTGCCCGGAGACCTAGCCCCCAGAGGAGTCAGTCGGACAGTGGGAGCGAGGGACAGCCGGAGGGGGGTGTAGGAGGGCAGACAGGGCTCAGTCCACACTCCACCCCGGACTCAGCCCGGAAGCTGGACGGGCGGAGAGACTCGCTGGGTTCGGGTGGATCTGATGGGAGTGGAGCCAGTGGAAGTATTTTCAAGATTCCCAAGATGAAGCACCCTAACCCATTCTACCTGGGCACCCTGAAGAagagtctgacagagagagagacagaggagatgtACCACACCATTAAGTTGACATCTGGGGCAGAGAACACTCTGTTCCACTATGTGCTGATGGAGACACTACAGGGCATCTTCATAGCTCCTACACACAGGGAGCTGGCCCAGCTCAGCGGCTCCATCCACCCTCAGCTCATACGTAACTTCCACCACTGCTGCCTCTCCATACGGGCCACCTTCCAGCAGAGTCTACCGTCCAGGCAGGGTAGGCGGGGTACAGACAGACCCCAGAGGACCCATGGGCTGGGCCCAGTGAAGGAACACGGGGTTCTGTTCCAGTGTAAACCTGAGAACTGGACCGACCAGAGGAAGCCTGCTCCCACCATGACCTACTGGGTGATAGGCCGGATGCTTCTAGAACCCGTCCCTCAGGAATTCTATGTGTGTTTTCATGACTCCGTGGCAGAGGTTCCCGTGGAGATGGCCTTCCGCCTATCTTTCGGCCTGGCCTTGTGACGAGCCGTCTGCCAACAGTCTCTTAATGAACTCTGATAACACTACTACCTACAGACAGCGGTGCACAACCCTGGGTTCTTTTCATTAGGCATCAAATGGGAGAAAACTGATAGAAACAGGGAGGGGCTACCTGAACTCCAATAAGAACCGCTTGTTTGTTTCCCGTCACAAAATATTTTACAACAGTAcaccctaatgaacacgaccctggtcTTCAACGTTTCATAGTCGACCTCAACGCCTGCTTACTGTCTGTCTGAGATATTGCGGGAACTAAGACTTGTCTTGTTCCAGACAGACATTGATCACCTGACAGCAGATAGGAAAGGAAAGACCAAGGTTGTTCTCTGttagacttggaccagctccagTGGAACAGCAGGGGACAACGCTGtggaacattcagatagaaatatatTAAATAGAAAAAACACGCCTGATATGTAGAATATTATTGTAAGGAATCACGTCAGCTCTATTCATTGCATTTCTATCTGTAACGTCTCACTACACTTGCCTACTGAACGAAGCCCTGGGTTTACTGGATGCAACAATTttgtgtccgaaatggcaccctactccgtATTGAGTGCACAGCTTTTGaatctggtcaaatgtagtgcactatgtagggaatagtgtgccatgtAGGACAAGCCACTAAACTCAATAATACCTCAGAAAACAGGCTGCAGGGAAAGCATTTTGCTGCTGTTCTGACCGTAGAAATAGAATCTCATTCTAGTTCAGTGGTTCTGACATTGTTGTTCATTTAAAGGTGCTACACATTGGatttttatttttgcattttgACCCGCCAGAGCAGCATCTGTTGTCAAAGTGAGAAAGCTGTTctggctgtgttatctagtggaaatccctctgtcatttcctggttgcaaaaattctacACTGTTCACTCAATTTCAGTTTGTGTGAAAACAAGCACTGGATAgtgtagggaatcattgtacAATCTAAATTGCTGTGAAATATCTTGCAATTCACCTAGCATAAGGCTGCATTCAAAACAAAACTCCCCCTCATCCCATTTCCCCGTAACATGGCGGAGAATTGCACTTGAGCCTTTACTTTgggttttggtccaccagctgCAAAAATCCTATGTGTAGCACCTTTTAAGTGTGCCTGACCAAATAATGTGACTGTTCTTGCTTGCTAGCCTCTCCACATTGGCATGGCAACCGCCTTAAGTGGAGTTAAATTCCTATATGTTGTTGattgtggggggggggtattgtaTTTAAGCTGTACAGTATTTTGCATAGAAGTCAAATAATTTGTGATACAAATGCACCTTTGAGTCTGTTGATtaaaataaaaacctgttttggtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU883070 lncRNA downstream 6143 15691479 ~ 15691679 (-) True G774983
TU883008 lncRNA downstream 35967 15658774 ~ 15661855 (-) True G774924
TU883017 lncRNA downstream 43416 15651030 ~ 15654406 (-) True G774933
TU883047 lncRNA downstream 62600 15634436 ~ 15635222 (-) True G774960
TU883046 lncRNA downstream 66041 15631180 ~ 15631781 (-) True G774959
TU883120 lncRNA upstream 33787 15773567 ~ 15773801 (-) True G775028
TU883137 lncRNA upstream 36306 15776086 ~ 15776434 (-) True G775042
TU883146 lncRNA upstream 42577 15782357 ~ 15785529 (-) True LOC110531603
TU883149 lncRNA upstream 49831 15789611 ~ 15791739 (-) True G775050
TU883152 lncRNA upstream 53066 15792846 ~ 15793351 (-) True G775053
XM_036989260.1 mRNA downstream 9075 15684639 ~ 15688747 (-) True LOC118966163
XM_021614883.2 mRNA downstream 18970 15666490 ~ 15678852 (-) True mfap3l
XM_021614882.2 mRNA downstream 89169 15605805 ~ 15608653 (-) True LOC110531598
XM_021614881.2 mRNA downstream 89434 15605030 ~ 15608388 (-) False LOC110531598
XM_036987420.1 mRNA downstream 97871 15595134 ~ 15599951 (-) True b4gat1
XR_005053464.1 mRNA upstream 3562 15743342 ~ 15743550 (-) True LOC118966198
XM_021614892.2 mRNA upstream 42129 15781909 ~ 15787666 (-) False LOC110531603
XM_021614893.2 mRNA upstream 62202 15801982 ~ 15804621 (-) True LOC110531606
XM_036989276.1 mRNA upstream 70371 15810151 ~ 15813197 (-) True LOC118966175
NM_001124562.1 mRNA upstream 80631 15820411 ~ 15823218 (-) True cxcd2
TU883038 other downstream 71902 15625202 ~ 15625920 (-) True G774954
TU882761 other downstream 336503 15352307 ~ 15361319 (-) True G774702
TU882572 other downstream 443849 15238058 ~ 15253973 (-) True G774562
TU882399 other downstream 973300 14724054 ~ 14724522 (-) True G774427
TU882202 other downstream 1443665 14249401 ~ 14254157 (-) True LOC118966145
TU883145 other upstream 42577 15782357 ~ 15787606 (-) False LOC110531603
TU883264 other upstream 122540 15862320 ~ 15863834 (-) True G775139
TU883736 other upstream 173056 15912836 ~ 15913294 (-) True G775532
TU884559 other upstream 1087273 16827053 ~ 16828523 (-) False LOC110531626
TU884558 other upstream 1087394 16827174 ~ 16828561 (-) False LOC110531626

Expression Profile