RNA id: NM_001124562.1


Basic Information

Item Value
RNA id NM_001124562.1
length 400
RNA type mRNA
GC content 0.45
exon number 4
gene id cxcd2
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 15820411 ~ 15823218 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTACCTTCTGATACAACAGCCACACTGCAACTACAGTCTACAGAGTCAAGATCATCATGAATACTGCAATGACTGTTATTGTTCTTCTGGTCTGCTCAGACGTCATCTGCATGATACAAGGGAGAACTATACAAGATCCTCGGTGCCGCTGTCCTACAGTACACACAGGGGGGGTGAATATCAGTTTAATCAGGAAACTGACCTATTACCCTCCTCGCTCACACTGCTCTAAGGAAGAACTCATTGTCACACTGAAATCCGGAGGTTTGCTCTGTCTCGAACCAAATGGGAGCTTTGCCAAAAAACTGATTAAAAGACAGACCAAAGTAAATCAACAGCGTCAGAATCAACGTTCCATTGAGACTCTCTCCACACATACCACCACTAGCACTTGATCACT

Function

GO:

id name namespace
GO:0042119 neutrophil activation biological_process
GO:0006955 immune response biological_process
GO:0030593 neutrophil chemotaxis biological_process
GO:0005576 extracellular region cellular_component
GO:0005153 interleukin-8 receptor binding molecular_function
GO:0008009 chemokine activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU883208 lncRNA downstream 7152 15802195 ~ 15813259 (-) False G775095
TU883210 lncRNA downstream 7152 15802300 ~ 15813259 (-) False G775095
TU883205 lncRNA downstream 15926 15802300 ~ 15804485 (-) False G775095
TU883161 lncRNA downstream 20235 15799895 ~ 15800176 (-) True G775062
TU883155 lncRNA downstream 25437 15794514 ~ 15794974 (-) True G775056
TU883220 lncRNA upstream 3372 15826590 ~ 15826845 (-) True G775104
TU883221 lncRNA upstream 5026 15828244 ~ 15828548 (-) True G775105
TU883222 lncRNA upstream 6441 15829659 ~ 15830128 (-) True G775106
TU883230 lncRNA upstream 17443 15840661 ~ 15840864 (-) True G775113
TU883237 lncRNA upstream 21522 15844740 ~ 15844966 (-) True G775120
XM_036989276.1 mRNA downstream 7214 15810151 ~ 15813197 (-) True LOC118966175
XM_021614893.2 mRNA downstream 15790 15801982 ~ 15804621 (-) True LOC110531606
XM_021614892.2 mRNA downstream 32745 15781909 ~ 15787666 (-) False LOC110531603
XR_005053464.1 mRNA downstream 76861 15743342 ~ 15743550 (-) True LOC118966198
XM_021614887.2 mRNA downstream 79558 15697822 ~ 15740853 (-) False intu
XM_036987430.1 mRNA upstream 30999 15854217 ~ 15857206 (-) False LOC118966003
XM_036987431.1 mRNA upstream 44688 15867906 ~ 15891269 (-) False LOC110532935
XM_021614897.2 mRNA upstream 128710 15951928 ~ 15979801 (-) True LOC110531609
XM_021614898.2 mRNA upstream 168723 15991941 ~ 16005269 (-) False LOC110531610
XM_036987435.1 mRNA upstream 168723 15991941 ~ 16029878 (-) False LOC110531610
TU883145 other downstream 32805 15782357 ~ 15787606 (-) False LOC110531603
TU883038 other downstream 194491 15625202 ~ 15625920 (-) True G774954
TU882761 other downstream 459092 15352307 ~ 15361319 (-) True G774702
TU882572 other downstream 566438 15238058 ~ 15253973 (-) True G774562
TU882399 other downstream 1095889 14724054 ~ 14724522 (-) True G774427
TU883264 other upstream 39102 15862320 ~ 15863834 (-) True G775139
TU883736 other upstream 89618 15912836 ~ 15913294 (-) True G775532
TU884559 other upstream 1003835 16827053 ~ 16828523 (-) False LOC110531626
TU884558 other upstream 1003956 16827174 ~ 16828561 (-) False LOC110531626
TU884560 other upstream 1003956 16827174 ~ 16828523 (-) True LOC110531626

Expression Profile