RNA id: XM_036987430.1


Basic Information

Item Value
RNA id XM_036987430.1
length 2401
RNA type mRNA
GC content 0.41
exon number 3
gene id LOC118966003
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 15854217 ~ 15857206 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTTCAAATGGAAATCGCTGAggtcacagccttattctttCTTGTTCTTACTGTCCTGACACTAATTCAGTCCAATTCGTGCACTGATAACAACCTATTCTATTATtgaaaataaagattaaatattaAACTGCAACAAGTGCCAGATTGGCGGTTTCCAAACAACACAGGTTCTGTAGCCCTTGTGAAGCACTGGGGAGAAATATGTAAAAGTTGACATTTTCTTTACATTTAGTTTATGACTAACTCCCAATGTGTCCTCTCTCCATAGTTTGACATAAAGATCCCGGTTGCCATTGTCAACTGTAGTTGCAGTGTTTCCTGTGGATCCAGGGGATTTTAAACAAAACTCTTACATAACATGCAGTATGGGAGCCAAACACAGTAAAACATGTACAGACACAGATGAGGATCCATTAATTACAAATGAAGTGTTAGATGAAGAGGAGGTCCTGTTTAATCGTTTGGATTTTGTGCTTATTGGAGGTAAGGGTGCTGGAAAGAGTACCGTAGGAAACATAATCCTTGACAAGAAGTCCTCTTTCTGGATATTCAGTAATAAACAACGTGTGAAGAAAATAAATCAGAAAATAACTGTGATCCGCACTCCAGGCTGGAGTGAGTCTGGACTCTATAGCAGTCAAAAGAAGATAAAGCGGCAGATCCAAGACTCTGTTAAGTCATTTAAAGACGGACCTAATGCTGTCCTCTTGGTCATTGAATCCACCTCTAAAAAGTATAGTTTTAATATGGGTGAGCAGAATATACTGGAAGATCTGCTTACCAAGGAAGTATGGGATTATACTGTGGTGTTGTTCACAAAAGGGGAAAAACTGGCTGAATTTGACCTCAGTGAGCAGAAAATCAAAGATACATTTGAGCATTtgataagaaaatgtggaaaccGGTGTCATGTTCTCTATGACAACAAGCCACGCAAGCAACAAaacagggaggtgatcaagacaTTGGAGGACATGTCTCTTAAAAACAAATATGAGAATTTCTACGTGGAGCAAGATGACACCGATTCTTTAACGATATCCAAGAGGTTGATGAAGAAGATCGCTCTGAAAGGAAACATTTTGAACAAAATTACAAAACTTTATTCACGTCTATCAACTGAAAATGGCAGATCCAACGAGTCCCTTCAGAATGAAATCAAAAAACTGAAAGAGATCCTTAAACAGAAGAATGCGGATATAACAAGACTACAGTCTTGTCTTAATCAGCATTCAGGGACAGACTCTCTCAGTCTGTcaaatatagacagacagacacagacagactgtcCAGGACTCCCCGAAGAAAACCAACAGAAACATCCCTTGATGGGAGAAGATAGCAATGAGGACACAAAAGTGGAGAGAAAATACTGGATGAatgaggtgaaggagagggatatagagataGAACAGTTAAAGACTAAGTTGGGAAAGCAAGCCAGCTATGGTACCATTGCAAAACCAGTGAACATGAATGGGAGACAGGACACAAATGGTAAATTCTTCAAGAAACACAAGTTGGCGTTGGAGGACCGTCTGGGACTGTTGCGGCCCATACTTCGGCTTCTCCAGGAGCGAGGGGTTCTGAATGACGAGGAGAGGCAGGAGGTGgacaacaaaacaaacaagacacTGAAGAACCAGGCCCTGCTGGAAATGGTTTTGTTGAAGGGAGCTTGTGCCCATGAGCAGTTCTACCAGGTACTGAGAGAAGTAGACCCTTTCCTAGTAAAGGACCTGGAAGAGAAGACAAGTTGACAAGAgcaggttggtgtgtagttaaGGATTCCGACCCCAACCAGAATAGGAGACCACTCTCCAGTTATGTTTGACATTATCTGTGCTGCCTACCAGATTAGGAACCTGTCGATTTCTAATCACTGGGATTTACTGGGATTTACATGCATTCATTTTACTGGGAATTACATGCATTCAGAGGGGTAAAGCGTTTTTCAAAATATACTGTTCAGAAAGGACAATATTCTTCACATTACATCACAAGTTAAATGATGTCTTAGCCTACTCCATGTAAAATGTATCTTTTAAGTGTCTTGAATAGGCCCCCAGGTCTCAGGAAAGGTGATGTGACCATGTAAGGCTAACATTTAACAGCCTCTACTACACAGGTGTACTAACTGCACACAACAAGCTCAGGTAAAAGTAAATACGCTGATCAGGAAAGTCTGTGGTTGAAGCTTGACACCCCCTGGTGTCATAGTGGAGGATGGAAATTGTTGGGCTTTGAAAATGATACTTTACACTGTATCATCTTGTGAGCCTCAATCCAAATCACTGCATGTTATAGTTCTGTCACTtcattttgtattttgttttatcatgtattttcctaCCATAGCCTATTCTGCTGTGTGAAACACAATTATTTCTCAGTgttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU883237 lncRNA downstream 9251 15844740 ~ 15844966 (-) True G775120
TU883230 lncRNA downstream 13353 15840661 ~ 15840864 (-) True G775113
TU883222 lncRNA downstream 24089 15829659 ~ 15830128 (-) True G775106
TU883221 lncRNA downstream 25669 15828244 ~ 15828548 (-) True G775105
TU883220 lncRNA downstream 27372 15826590 ~ 15826845 (-) True G775104
TU883707 lncRNA upstream 10701 15867907 ~ 15868130 (-) True LOC110532935
TU883713 lncRNA upstream 22133 15879339 ~ 15879538 (-) True G775511
TU883727 lncRNA upstream 40728 15897934 ~ 15898210 (-) True G775523
TU883728 lncRNA upstream 41819 15899025 ~ 15899479 (-) True G775524
TU883729 lncRNA upstream 43686 15900892 ~ 15901203 (-) True G775525
NM_001124562.1 mRNA downstream 30999 15820411 ~ 15823218 (-) True cxcd2
XM_036989276.1 mRNA downstream 41020 15810151 ~ 15813197 (-) True LOC118966175
XM_021614893.2 mRNA downstream 49596 15801982 ~ 15804621 (-) True LOC110531606
XM_021614892.2 mRNA downstream 66551 15781909 ~ 15787666 (-) False LOC110531603
XR_005053464.1 mRNA downstream 110667 15743342 ~ 15743550 (-) True LOC118966198
XM_036987431.1 mRNA upstream 10700 15867906 ~ 15891269 (-) False LOC110532935
XM_021614897.2 mRNA upstream 94722 15951928 ~ 15979801 (-) True LOC110531609
XM_021614898.2 mRNA upstream 134735 15991941 ~ 16005269 (-) False LOC110531610
XM_036987435.1 mRNA upstream 134735 15991941 ~ 16029878 (-) False LOC110531610
XM_036987437.1 mRNA upstream 134735 15991941 ~ 16029878 (-) False LOC110531610
TU883145 other downstream 66611 15782357 ~ 15787606 (-) False LOC110531603
TU883038 other downstream 228297 15625202 ~ 15625920 (-) True G774954
TU882761 other downstream 492898 15352307 ~ 15361319 (-) True G774702
TU882572 other downstream 600244 15238058 ~ 15253973 (-) True G774562
TU882399 other downstream 1129695 14724054 ~ 14724522 (-) True G774427
TU883264 other upstream 5114 15862320 ~ 15863834 (-) True G775139
TU883736 other upstream 55630 15912836 ~ 15913294 (-) True G775532
TU884559 other upstream 969847 16827053 ~ 16828523 (-) False LOC110531626
TU884558 other upstream 969968 16827174 ~ 16828561 (-) False LOC110531626
TU884560 other upstream 969968 16827174 ~ 16828523 (-) True LOC110531626

Expression Profile