RNA id: TU883707


Basic Information

Item Value
RNA id TU883707
length 224
lncRNA type sense_over
GC content 0.32
exon number 1
gene id LOC110532935
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 15867906 ~ 15891269 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATCATACATGTAGCTACTATAACCCATTTACCAACAGTTTAGAGATGGGGTTGCTTTGTTGTTAAATATGAGTGAATGCATCTATGGTCATGTTGTTTCACAAAATagaactacagtatgtaatgcaatGACGTTAAGGACAAGTTAAGtgtcattgttttgtttttacttTTGACTTCTAGCACAACATGTTTTATATCACGCAAATAAAATAATACACGATG

Function

GO:

id name namespace
GO:0018149 peptide cross-linking biological_process
GO:0046872 metal ion binding molecular_function
GO:0003810 protein-glutamine gamma-glutamyltransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU883253 lncRNA downstream 10708 15856779 ~ 15857199 (-) True LOC118966003
TU883237 lncRNA downstream 22941 15844740 ~ 15844966 (-) True G775120
TU883230 lncRNA downstream 27043 15840661 ~ 15840864 (-) True G775113
TU883222 lncRNA downstream 37779 15829659 ~ 15830128 (-) True G775106
TU883221 lncRNA downstream 39359 15828244 ~ 15828548 (-) True G775105
TU883713 lncRNA upstream 11209 15879339 ~ 15879538 (-) True G775511
TU883727 lncRNA upstream 29804 15897934 ~ 15898210 (-) True G775523
TU883728 lncRNA upstream 30895 15899025 ~ 15899479 (-) True G775524
TU883729 lncRNA upstream 32762 15900892 ~ 15901203 (-) True G775525
TU883742 lncRNA upstream 58097 15926227 ~ 15926590 (-) True G775538
XM_036987430.1 mRNA downstream 10701 15854217 ~ 15857206 (-) False LOC118966003
NM_001124562.1 mRNA downstream 44689 15820411 ~ 15823218 (-) True cxcd2
XM_036989276.1 mRNA downstream 54710 15810151 ~ 15813197 (-) True LOC118966175
XM_021614893.2 mRNA downstream 63286 15801982 ~ 15804621 (-) True LOC110531606
XM_021614892.2 mRNA downstream 80241 15781909 ~ 15787666 (-) False LOC110531603
XM_021614897.2 mRNA upstream 83798 15951928 ~ 15979801 (-) True LOC110531609
XM_021614898.2 mRNA upstream 123811 15991941 ~ 16005269 (-) False LOC110531610
XM_036987435.1 mRNA upstream 123811 15991941 ~ 16029878 (-) False LOC110531610
XM_036987437.1 mRNA upstream 123811 15991941 ~ 16029878 (-) False LOC110531610
XM_036987436.1 mRNA upstream 123811 15991941 ~ 16029880 (-) False LOC110531610
TU883264 other downstream 4073 15862320 ~ 15863834 (-) True G775139
TU883145 other downstream 80301 15782357 ~ 15787606 (-) False LOC110531603
TU883038 other downstream 241987 15625202 ~ 15625920 (-) True G774954
TU882761 other downstream 506588 15352307 ~ 15361319 (-) True G774702
TU882572 other downstream 613934 15238058 ~ 15253973 (-) True G774562
TU883736 other upstream 44706 15912836 ~ 15913294 (-) True G775532
TU884559 other upstream 958923 16827053 ~ 16828523 (-) False LOC110531626
TU884558 other upstream 959044 16827174 ~ 16828561 (-) False LOC110531626
TU884560 other upstream 959044 16827174 ~ 16828523 (-) True LOC110531626
TU884616 other upstream 997337 16865467 ~ 16866034 (-) True G776294

Expression Profile