RNA id: XM_021614897.2


Basic Information

Item Value
RNA id XM_021614897.2
length 2037
RNA type mRNA
GC content 0.44
exon number 6
gene id LOC110531609
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 15951928 ~ 15979801 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGCACACTGGATCCTTGAGGGGTGGAACTGACCATCCATCAGTTAGCTAAATTATTTCCAAGCGTAGCACTCACTGTCACTTTTGTTTTTTCATATGTATGTGTTTTATTTTACATGAAACGAGATgtggtttatttatttactaagttGGCTGTCGTTGGTGATACAAATATCTTTCGTCACACTAGCAATTGcTGCTGGCCTGTATTATTTGGCAGAACTAATAGAAGAATACACAGTTGCCACTAGTCGAATAATAAAGTACATGATACTGTTCTCCACAGGCGTGCTGTCGGGGCTGTACCTGTTTGAAGGCTTCCCATGGCTGATGATGGGCTGTGGTCTCTTCACCAACCTGGTGTACTTTGGCCTCCTGCAGACCTTCCCTTACATACTGCTGAGCTCACCTAACTTCATCCTCTCCTGTGtattGGTGGTGCTGAACCACTACATGGCCTTCCAGTACTTTGCAGCAGAGTATTACCCCTTCTCAGAGGTCCTTGCGTACTTCACCATCTGTCTGTGGATTATCCCCTTCTCGTTCTTCGTGTCACTCTCTGCTGGGGAGAACGTGCTTCCATCCACCATGCAGCAAGGAGATGACGTGGTCTCAAATTACTTCACCAAGGGAAAGAGGGGCAAGCGGTCCGGAATCCTGCTCATCTTCTCATTCCTAAAGGAGGCGGTGTTGCCTAGTCGACAGAAGATGTACTGATGCTCTACCTGGGGgtttgggtgggggtgggggggggatagATTTGGGAAGGGACTAAAGGAGAGGTggcggaggaggagggaagaaaaggaggaggaaggagagtgcATCGTAGCAGAGCAGATGAGAGCTCCCACTATTACTACGGACTAGCAGCAGTGCGTTTTACAGGACTGATacatctctcttactctctctgtgtccgaaatggcaccctattccctatatagtacacttatatatatatatatatagtacactatatagggtatCCATGTCGGTCTGTGATGACGACTGCCAATGAACAACTGAagacttctccctccctctctggctcCTGTTCTCCAGCTACAGTAAAAGCCTCTGTAGGCTCTACTCCAACACTCTTCGGTTCTGTTTTATAAAGGTTTGTTAAGGAAACTACGTGCTGGTGTGAGTCATCTAGGCCGTATTCATTAGCGCAAAATGGAAAcgagcgtttcttattggacaagttcatgtTGTTCCCTCTGTTTATAGTCAGTtgtcttctgtttggtgcctaatgaataacAGCTAAGTGGAGAAGTCAGGTTGGAAGTGAGAATGAGAACAAGGTTGGGGTAAAACTAAGCCAGATAGGATCTCTTGAATgagtccaaatggcaccctatttcctacatagtgcacttcttttgacctgagtcccatgggccctggtcaaaagtagtacactatatagggaatagggtaccatttgggacacaacccttgtcttgtcttgtgtgCTGGGCCGTTAACTCCCTGCAAGTATGGGGTCGCCTATAACCCAATGTTTGTACGTGGACCCATAGGaatgcatttttttgttgtttcttcACTGTTCCCCATTCATTGACTTTATCGTTATAAAATTACTTATTCTCCTGAACTGtttaaaagaagaaaaaaaacttaaataatatataagtgattttttttttggggggggggggggggggggtatcaatTGATAGAAAAAACTGAACAAACAAACATTCCCACAAATACTTGTGCAATGATTTCTGTATGCCTGTTATGGCTGAATCTGGGTTTGTTTAGAGGGAGGAACTGATCATGTGATTATTAAAGAGGCAGTACATGGTGTGAGACTCATCACTGATTGGTTGTTTGGAAGATGCATGGTATAAGACTGATTAGCTGTGAGGCagggtacagtgccttcagaaaatattcacaccccttgactttttacacattttgtcgttctgcagcctgaatttaaaatgagtTAAATAGAGATTTGGAATTAGCTTTTGAGATGTTttacaaatgtaataaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU883718 lncRNA downstream 141 15950795 ~ 15951787 (-) True G775516
TU883745 lncRNA downstream 20991 15930625 ~ 15930937 (-) True G775541
TU883742 lncRNA downstream 25338 15926227 ~ 15926590 (-) True G775538
TU883729 lncRNA downstream 50725 15900892 ~ 15901203 (-) True G775525
TU883728 lncRNA downstream 52449 15899025 ~ 15899479 (-) True G775524
TU883775 lncRNA upstream 7604 15987405 ~ 15987780 (-) True G775570
TU883786 lncRNA upstream 25963 16005764 ~ 16006258 (-) False G775577
TU883787 lncRNA upstream 25963 16005764 ~ 16006258 (-) True G775577
TU883795 lncRNA upstream 34955 16014756 ~ 16015038 (-) True G775584
TU883796 lncRNA upstream 35240 16015041 ~ 16015365 (-) True G775585
XM_036987431.1 mRNA downstream 60659 15867906 ~ 15891269 (-) False LOC110532935
XM_036987430.1 mRNA downstream 94722 15854217 ~ 15857206 (-) False LOC118966003
NM_001124562.1 mRNA downstream 128710 15820411 ~ 15823218 (-) True cxcd2
XM_036989276.1 mRNA downstream 138731 15810151 ~ 15813197 (-) True LOC118966175
XM_021614893.2 mRNA downstream 147307 15801982 ~ 15804621 (-) True LOC110531606
XM_021614898.2 mRNA upstream 12140 15991941 ~ 16005269 (-) False LOC110531610
XM_036987435.1 mRNA upstream 12140 15991941 ~ 16029878 (-) False LOC110531610
XM_036987437.1 mRNA upstream 12140 15991941 ~ 16029878 (-) False LOC110531610
XM_036987436.1 mRNA upstream 12140 15991941 ~ 16029880 (-) False LOC110531610
XM_036987432.1 mRNA upstream 12140 15991941 ~ 16029898 (-) False LOC110531610
TU883736 other downstream 38634 15912836 ~ 15913294 (-) True G775532
TU883264 other downstream 88094 15862320 ~ 15863834 (-) True G775139
TU883145 other downstream 164322 15782357 ~ 15787606 (-) False LOC110531603
TU883038 other downstream 326008 15625202 ~ 15625920 (-) True G774954
TU882761 other downstream 590609 15352307 ~ 15361319 (-) True G774702
TU884559 other upstream 847252 16827053 ~ 16828523 (-) False LOC110531626
TU884558 other upstream 847373 16827174 ~ 16828561 (-) False LOC110531626
TU884560 other upstream 847373 16827174 ~ 16828523 (-) True LOC110531626
TU884616 other upstream 885666 16865467 ~ 16866034 (-) True G776294
TU884666 other upstream 1030211 17010012 ~ 17014685 (-) True G776340

Expression Profile