RNA id: XM_036987436.1


Basic Information

Item Value
RNA id XM_036987436.1
length 2400
RNA type mRNA
GC content 0.52
exon number 18
gene id LOC110531610
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 15991941 ~ 16029898 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCaggacaggggaggtagagagtaAAGATGGGCTCCTCTCAGCAGCTCAGAGGACACTACAGAGTTGAGAGGGGGAGCTACCAGCCACAGGTGCTGGTGCAGAGCACATGGGACGACTGCTTCCTCTGCCACCATTCTGGCTCCACGATGAGACAGTGACCATCCATTACGGGTCTGTGCCACAGTGTGCCAGTCGgctccagcagacagacagtatcttctgtGACCTCATCATCATGAGACAGTGCCTCTGGTGGAGAAAGCAGTTGCTCCTCTGAAGATGAAGGAGACATTCAGTGTGAGATTCTGGAGAAGCAGAGGGATGAAGCCAATCAGAAGCTATCTGAGATGGAGGAAGTGTCCTCTCAGCTGTTGAAGGAGATGGAAGTTCTGGAGATGCAGTTCCAGATTGAACGCTCCTGCAGGGAGAGTGCAGAGGCCCTGGCTGTCAAGGTGACCAAAGACAACAAGGTTCTGAAGAGGCGGAGCCAGGCTCTGCTGCCATTAATCCCAGAGCTTCCTGAAAACCTGGAGGCTGACCTTGGGGTCGATCCCGACCCTGATGGGGACAGCGGGGAGGATGCTGTGCTGCAAGGACAGGCCCAGATAAGAGAACTGCAGGCCTCGGTGGACCAGCTGCTGGGGGAGAAGCTGCGGCTGTGTGAGCAGGTGGAGGCCCTGAGGGCAGAGCAGAACCAGCTCAAAGAACAGCTGGCCCTAGAGATTGATGAGAGAGAGGCCATACTGAAGAAACTGTCCAAACAGAACAAGACCATGAATAAGATGAAGAGAGTGTCCCAGCTTGTGACAGAGGAGTtcacagagatcagtcagaaacTGGAGCTGGAGCAGGGCCTCAGACAGCACGCAGAAGTCTTCGCCCACCAGGTGTTGGTGAAGCAGAAGCAAACCCAGAGACAGAGCATGGTGCTGCAGCAGAGTTCAGAGACAAGTATGCAGCTCCAACAGGCTCTGGAACAGGTGGCCCACATCAACAGTACCTTACAGGACATACAGCTCTACTACCGAAACCagGTGAAGCAGACCCAGTGTGCTCTGGAGGAGAGCAGTGTTCTGTCTGAGCTGCAGATTGTCAGAGGCCAGCTGGAGAgcagtgagaaggagaggaggaccatgGAGACCCATCTAAGGGAGGCGCAGATCACTGCCGCCCACCTACAGGGAGAAGGTAGCTACCACGTCTTGAAACATCTCCAGGATAGGCTGAAAGACCAGGTTTCCAAAGCTGACCAACCAGTGGAGGACAACTCAACcactgctcctcctccccctcctcctccccctcctcctccccctcccctgcccCCAACTCCCTCCAGCACTGTTGTTGATCAACTTGTCATCCTGCGCAACAAGAGGAAGGAGTCCGTCAACAACACTGATAAGAATAaGCCAGATCCTTCTGTGGACATGAAGACCCGAGCGGTGGatgagatgatggagaggataaaGAAAGGCATCGTCCTGAGACCCACCCTGAGACCACAGCCTGGATCAGAAGATGACAGTGCCTGGAGGGACCATAGGAGTGAGAAGAGAAAGTCAGCCGTGCTGGATCTAAAAGGAATGCTGGACACCATGAAACGCCCAGGCCACAGGAGGGCGGGGTCACGGAAGAGGATAAGCCGAAACGTAGGGGAGGCGGAGCTACATCTGGTGCTACTGAGGAGGAGGCGGGCCATGGGGGATGGACAGGACACCCCCGGACCCTCCCCAACCCCCTCCCCAGCCCCTCCCACCACCAAAATCCAAGGTCCCCAGCCGGGTGGCCCAGCAGAAGGTGCCCTTCTCTGCGCAGGAGAGCGTGGCAGCACCCCTGTGCTCAGGAGGCTCcagcagaacagagagaagaggaactCTCGTATCAGATCATCAGAACTGATCATCTGCCAGGAGGAGATCTGAGCCTTGGGGAAAGGGATGATTAGTGTTAGGATACTGTTCCACAGCGTTTTCCAAACCTCCCCTggagtacccccagccagtcaaCTGATTTGATGTATTCCAAGCAAAGCTGACGTAAATGTCATCTTACCTTTAATCAACAAACCCCTCATTAGTTAAATCAGCTGGCTAGCTTTGGAATACATCAAATGTGTGGACTAGCTAGGGGTACTGAAGGAGAGGTTTTGGGAACACTGTTGTAACACAATCATATTGatgcactgtatattttaatatatagatttatatggttagtgctgagcaattagtgctttttgaggtcagtTCGGTTTCTAAAAAAAAGAATCACATCTTCAATTTGGGTTTAGCATTAAAATATGTTTACAATAAATTTGTTATGTTGGTTGAATATTGTAACAAAACAGAATAAATCAAATGATGGTAGTGATGTCTCATTACTATCACTTATACGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU883775 lncRNA downstream 4161 15987405 ~ 15987780 (-) True G775570
TU883762 lncRNA downstream 23189 15968085 ~ 15968752 (-) True G775558
TU883718 lncRNA downstream 40154 15950795 ~ 15951787 (-) True G775516
TU883745 lncRNA downstream 61004 15930625 ~ 15930937 (-) True G775541
TU883742 lncRNA downstream 65351 15926227 ~ 15926590 (-) True G775538
TU883805 lncRNA upstream 4153 16034033 ~ 16034348 (-) True G775594
TU883807 lncRNA upstream 7643 16037523 ~ 16037910 (-) True G775596
TU883810 lncRNA upstream 12088 16041968 ~ 16042333 (-) True G775599
TU883811 lncRNA upstream 12500 16042380 ~ 16042743 (-) True G775600
TU883813 lncRNA upstream 13609 16043489 ~ 16043792 (-) True G775602
XM_021614897.2 mRNA downstream 12140 15951928 ~ 15979801 (-) True LOC110531609
XM_036987431.1 mRNA downstream 100672 15867906 ~ 15891269 (-) False LOC110532935
XM_036987430.1 mRNA downstream 134735 15854217 ~ 15857206 (-) False LOC118966003
NM_001124562.1 mRNA downstream 168723 15820411 ~ 15823218 (-) True cxcd2
XM_036989276.1 mRNA downstream 178744 15810151 ~ 15813197 (-) True LOC118966175
XM_021614900.2 mRNA upstream 18864 16048744 ~ 16087030 (-) True LOC110531611
XM_036987438.1 mRNA upstream 66082 16095962 ~ 16117642 (-) False LOC110531612
XM_021614903.2 mRNA upstream 66082 16095962 ~ 16117672 (-) False LOC110531612
XM_021614901.2 mRNA upstream 66082 16095962 ~ 16117696 (-) False LOC110531612
XM_021614902.2 mRNA upstream 66082 16095962 ~ 16117909 (-) False LOC110531612
TU883736 other downstream 78647 15912836 ~ 15913294 (-) True G775532
TU883264 other downstream 128107 15862320 ~ 15863834 (-) True G775139
TU883145 other downstream 204335 15782357 ~ 15787606 (-) False LOC110531603
TU883038 other downstream 366021 15625202 ~ 15625920 (-) True G774954
TU882761 other downstream 630622 15352307 ~ 15361319 (-) True G774702
TU884559 other upstream 797173 16827053 ~ 16828523 (-) False LOC110531626
TU884558 other upstream 797294 16827174 ~ 16828561 (-) False LOC110531626
TU884560 other upstream 797294 16827174 ~ 16828523 (-) True LOC110531626
TU884616 other upstream 835587 16865467 ~ 16866034 (-) True G776294
TU884666 other upstream 980132 17010012 ~ 17014685 (-) True G776340

Expression Profile