RNA id: XM_021614904.2


Basic Information

Item Value
RNA id XM_021614904.2
length 3440
RNA type mRNA
GC content 0.40
exon number 6
gene id LOC110531612
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 16095962 ~ 16117909 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCCACAAAGTGAAATTCCTCAGCCACAAACTCAAAATTGGTTAcaaaaattagatttttggtCTTATTTTAAAGTTAGACATACAATTAGCAGTGCGATTAAGGTTACGGTTATAATCAAAAtctgattttaagaagataaatccTAGAAATAGGCGAGTaacgactttgtggctgtgctaacTAGTGACGACCAAGGGGGAGTGGATGCGTATCTACGGGTCATTTTGTGGCTGGGCCATAGAGATGACCAGGCTGTGACGGTtgggttctctctctgtctgtggacCAACCCTGGCATGGCTACTGCTAGGAAGATTGGTCTCTCCCTCTTCAGGCTCCGCAGGAAAGGCGGGAGGTGTTGGTTTCTCAGAAGAGCCAGCCGCCGGCACGCCGTCCCATGTCCACTTTGATGAGAAGCTCCACGACTCTGTCGTCATGGTGATCCCTCAGCCTGACGGGAACTTTATGGTCAAGGTTGGTTTCCTGAAGACCCAGCACAAGTATGAGATTGTCTTCACCCTCCCGGAGCTTCCATCACTGGGGAAGGACGCGTCTCCAGCTCCAGTACCCAACCCCCATATCCGCATCACTGATATCACTCCTGTACCAGAGGgtGGTCTGAGAGTGACATGTGAGTACATGGCCCACCAGGAGGGGGTGCTGTGTGAGGAGGTGATGCTGGTCAGTGAGAGCCAGGAGGACGTCTGCGTGGGGGTCAAGGTGCACGCCCGCGTCATGGACCGTCACCATGGTACACCCATGTTGTTGGAAGGAGTGCGTTGTGTGGGAGTGGAGCTGGAGTATGACTCTGAACAGAGTGACTGGCAAGGATTtgactaaaccagacaatgtgacacagacacacaaaagaCCATGCCACATGTGTTCAAATTCAACATCCACTGTACTTCAAACGATCCCTGACCATTTCAAGATGTTATGGTCCTAAAGGAGGATTAAATTAGGAAATGGATAGAAGTTATTTTAAGTAGTAGTCTGGGTTTTTAATTTTACATTCAGGCCGTACTTGGCCGCTAAAAGCTGAATTGCAGCACACAACGCATACAAGTAAACAAATCAaatcttaccttgcttcaaaagTAAAACAAACAAGCatcaaaaccttttttttttaaagcaagtcCAATGTGATCCGATCACTATTGAGCTTCCCTCAactatactgaacacaaatataaacgtaacatttAACAATttcagttacagttcatataaggaaatcaaataaattcattaggccctaatctatggatttcacgactagAAATACcgatatgttggtcacagataccttaaataaAAAAGATAATGATCAtgcggtttaatcagcttcttgttatgccacacctgtaggtggatggattattttggcaaaggagaaatgctcactatggATGTTAACaagtttgtgcacaaaatgtaagAGATGCTTTTTTTGCATCTGGAAAAGTTCTGGGATCTTTATATTTTAGCTCATGAaccatgggaccagcactttaaatgttgcgtttatatttttgttcagtatagttaacaTATCTGAAATGCATCTGTACGAAGTACTGTTGTTAGTACTGTGATAACACGCTATCCAACTGCCCATGCCATTCCACTGCCTGCCTGCCCCTATGTTGTTTAGAATGTGTTCTGAGTAAACCTTTAGGGGGCAACAAAGTTCACGTAATCAATCCAGACCATTTCACCCAGCCTAAATTCAACTGTACCAATAGGGGGCGACAAAAAACACTAAAATTATCCCTCTCATCTGAATCCAAAGGTGTAGAGGGATTCAAAAGGACTTTTTTAAATGAAAGAATGATACGCTATTAATCAGTCGCAAGTGCCTACGGTGCTGTACAGCTTTTACCATCAACAACTGCCTTCTGTCCCGTACTATCCTATCTATCAAGTATCTCCCCTTCAGGAGTTAAAAGATTTAGGACTTTAGTGGATCAACGATAGCTCAGCCTTCCAATATATAATTTTTATatctacaaaacatttcaagtatatttataaaatattaaAGATTGGTGCCATCAGTACCATTGGTAGTAAATCCACACTCAAATTAGATTGCCAGTTGTTTTTTGCTCTTTTAATATATTTGAGGCAACAAGAAGAAATAAAAGACAAACATTTTGGTTGTTAGCCCACCATGAATCAGCCAACAACTAGTAACTCTTACCCTTTATCTACCCCCAAAGCCCTCACCATCCTCTCTGAGCACTCATACTCTCATTGCAACCTAATAGTTTAGTAGTCACTGTTTACTGTCAATAGCTAGTCATTGTAAATGTATATTCCGATCAAATAAGAATGTCAAGTATCTAGCATAAAACATATCCTAATTTCACATAGCTAAACGGACAAAGCCCTGTTTTAAATATAATTGTTTTATATCAGACAATCTTCATGTGTTAACTGTGTTCGGCCTTAATTGAGGAGAACCTGTATATCGTTTGTTTGTATAATAGGCTCTAATGTCTTAAAGTTATACCTTGTTGTTATGGTGTCCATACTAAATCCATGCTCCAGGGtaggggtcaattccatttcaattcaggaagtacatttGAAATGCCAGTTCTTTTCAATTAGGAAAATGTGGAATTGGAATTCTGTTTACTTTCTGAGTTGACTGGAATGGAAATGTCCTGAACCCTGCCATGCTTCAAAAGCTAGTGAGACCGAGTGTGGATTCAGTTTGGATACAAGGCGATCTTGTCCTTTTGAATAGAAAAGAGAGGGCACTATTGTTCATGCAGTCAGACTTATCAAAATAATATCCTTAGCCCATATTGTGATGGGCATCATAGcaggtttggggtcaattccatttaaattccagtcaattcagaaagtaaaccaacaTCCAAATTGTCTGAATTGAAATGTCAgtgtactttctgaattgactgaaatTCAAATGGAGTTGACCCCAGCTCTGGTTGTTGGGTAATTGTACTGAGGGGTTACGGTACTAGGGGGGTGTGGCATTTTGTCAGTCGATATACAATACATGTTCCTTCATTGGTGTTTGCtactattgtctctgttcttttctTATGCCATAAACTTTGTTTTAAGTGCTTATCAAGAAAAACTCCCAAAAGGACTGATTTGAGGTAGAAAGACGTTGGAgcactcaacaacaaaaaagcaggGATGTATTTATTTTAGCTCACTTTAATCCATTCTATGTGATGTCAACAGGTGGATGTCAAGCTGACAATAAAtcaatgtcagattttaaaataaaataaaattgtttaGTGCTCCAACTTCATTCGACTTCAAATGAGTCCTTTTGGAAGTTTAAGCGCTTCTCATgaattgttgttattgttgttgagcACCTTTGTCTGCTGAAGTGTGAACGCCCACCTGAACTAATAAAGTTTGTGTTTAATTGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU883827 lncRNA downstream 30116 16063926 ~ 16065846 (-) True G775612
TU883814 lncRNA downstream 48669 16045612 ~ 16047293 (-) True G775603
TU883813 lncRNA downstream 52170 16043489 ~ 16043792 (-) True G775602
TU883811 lncRNA downstream 53219 16042380 ~ 16042743 (-) True G775600
TU883810 lncRNA downstream 53629 16041968 ~ 16042333 (-) True G775599
TU883861 lncRNA upstream 2358 16120267 ~ 16127928 (-) True G775645
TU883867 lncRNA upstream 10884 16128793 ~ 16129573 (-) False G775650
TU883870 lncRNA upstream 10884 16128793 ~ 16129615 (-) False G775650
TU883868 lncRNA upstream 10956 16128865 ~ 16129573 (-) True G775650
TU883872 lncRNA upstream 12840 16130749 ~ 16131239 (-) True G775651
XM_021614900.2 mRNA downstream 8932 16048744 ~ 16087030 (-) True LOC110531611
XM_036987432.1 mRNA downstream 66064 15991941 ~ 16029898 (-) False LOC110531610
XM_036987434.1 mRNA downstream 66064 15991941 ~ 16029898 (-) True LOC110531610
XM_036987436.1 mRNA downstream 66082 15991941 ~ 16029880 (-) False LOC110531610
trnak-cuu-4 mRNA upstream 15136 16133045 ~ 16133117 (-) True trnak-cuu-4
trnan-guu-3 mRNA upstream 15696 16133605 ~ 16133678 (-) True trnan-guu-3
XM_021614905.2 mRNA upstream 68348 16186257 ~ 16219936 (-) False gba2
XM_021614906.2 mRNA upstream 68348 16186257 ~ 16219936 (-) False gba2
XM_021614907.2 mRNA upstream 68348 16186257 ~ 16220121 (-) True gba2
TU883736 other downstream 182668 15912836 ~ 15913294 (-) True G775532
TU883264 other downstream 232128 15862320 ~ 15863834 (-) True G775139
TU883145 other downstream 308356 15782357 ~ 15787606 (-) False LOC110531603
TU883038 other downstream 470042 15625202 ~ 15625920 (-) True G774954
TU882761 other downstream 734643 15352307 ~ 15361319 (-) True G774702
TU884559 other upstream 709144 16827053 ~ 16828523 (-) False LOC110531626
TU884558 other upstream 709265 16827174 ~ 16828561 (-) False LOC110531626
TU884560 other upstream 709265 16827174 ~ 16828523 (-) True LOC110531626
TU884616 other upstream 747558 16865467 ~ 16866034 (-) True G776294
TU884666 other upstream 892103 17010012 ~ 17014685 (-) True G776340

Expression Profile