RNA id: trnak-cuu-3


Basic Information

Item Value
RNA id trnak-cuu-3
length 73
RNA type mRNA
GC content 0.58
exon number 1
gene id trnak-cuu-3
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 16132804 ~ 16132876 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

Gcccggctagctcagtcggtagagcatgagactcttaatctcagggtcgtgggttcgagccccacgttgggcg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU883434 lncRNA upstream 137 16132459 ~ 16132667 (+) True G775291
TU883433 lncRNA upstream 601 16131724 ~ 16132203 (+) True G775290
TU883377 lncRNA upstream 86622 16045606 ~ 16046182 (+) True G775236
TU883373 lncRNA upstream 90177 16042162 ~ 16042627 (+) True G775234
TU883370 lncRNA upstream 95414 16037084 ~ 16037390 (+) True G775231
TU883437 lncRNA downstream 2721 16135597 ~ 16135829 (+) True G775294
TU883439 lncRNA downstream 3772 16136648 ~ 16136992 (+) True G775296
TU883441 lncRNA downstream 17249 16150125 ~ 16150593 (+) True G775298
TU883513 lncRNA downstream 119024 16251900 ~ 16252241 (+) True G775343
TU883514 lncRNA downstream 119467 16252343 ~ 16252544 (+) True G775344
trnav-uac-15 mRNA upstream 3002 16129730 ~ 16129802 (+) True trnav-uac-15
trnav-uac-14 mRNA upstream 11768 16120964 ~ 16121036 (+) True trnav-uac-14
XM_021614890.2 mRNA upstream 434981 15692085 ~ 15697823 (+) False ino80b
XM_021614891.2 mRNA upstream 434986 15692086 ~ 15697818 (+) True ino80b
XM_021614872.2 mRNA upstream 472710 15629032 ~ 15660094 (+) False clcn3
trnan-guu-4 mRNA downstream 1421 16134297 ~ 16134370 (+) True trnan-guu-4
trnan-guu-5 mRNA downstream 10624 16143500 ~ 16143573 (+) True trnan-guu-5
trnan-guu-6 mRNA downstream 15785 16148661 ~ 16148734 (+) True trnan-guu-6
trnan-guu-7 mRNA downstream 20960 16153836 ~ 16153909 (+) True trnan-guu-7
trnan-guu-8 mRNA downstream 26110 16158986 ~ 16159059 (+) True trnan-guu-8
TU883269 other upstream 266096 15866089 ~ 15866708 (+) True G775142
TU881932 other upstream 631728 15471507 ~ 15501076 (+) False LOC110531590
TU881976 other upstream 667180 15465360 ~ 15465624 (+) True G774065
TU881923 other upstream 755616 15375224 ~ 15377188 (+) True G774021
TU881866 other upstream 833590 15298458 ~ 15299214 (+) True G773983
TU883454 other downstream 53400 16186276 ~ 16187450 (+) True G775306
TU883480 other downstream 104498 16237374 ~ 16239534 (+) False LOC110532936
TU883479 other downstream 104579 16237455 ~ 16239534 (+) False LOC110532936
TU883488 other downstream 104579 16237455 ~ 16239758 (+) False LOC110532936
TU883487 other downstream 115854 16248730 ~ 16250864 (+) True LOC110532936