RNA id: trnak-cuu-4


Basic Information

Item Value
RNA id trnak-cuu-4
length 73
RNA type mRNA
GC content 0.56
exon number 1
gene id trnak-cuu-4
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 16133045 ~ 16133117 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

Gcccggctagctcagtcggtagagcatgagactcttaatctcagggtcgtgggttcgagccccacgttgggcg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU883874 lncRNA downstream 464 16132309 ~ 16132581 (-) True G775653
TU883872 lncRNA downstream 1806 16130749 ~ 16131239 (-) True G775651
TU883870 lncRNA downstream 3430 16128793 ~ 16129615 (-) False G775650
TU883867 lncRNA downstream 3472 16128793 ~ 16129573 (-) False G775650
TU883868 lncRNA downstream 3472 16128865 ~ 16129573 (-) True G775650
TU883877 lncRNA upstream 4455 16137572 ~ 16137787 (-) True G775656
TU883878 lncRNA upstream 17015 16150132 ~ 16150613 (-) True G775657
TU883893 lncRNA upstream 56079 16189196 ~ 16189952 (-) True G775668
TU883931 lncRNA upstream 117852 16250969 ~ 16251198 (-) True G775700
TU883933 lncRNA upstream 121674 16254791 ~ 16255888 (-) True G775702
XM_021614902.2 mRNA downstream 15136 16095962 ~ 16117909 (-) False LOC110531612
XM_021614904.2 mRNA downstream 15136 16095962 ~ 16117909 (-) True LOC110531612
XM_021614901.2 mRNA downstream 15349 16095962 ~ 16117696 (-) False LOC110531612
XM_021614903.2 mRNA downstream 15373 16095962 ~ 16117672 (-) False LOC110531612
XM_036987438.1 mRNA downstream 15403 16095962 ~ 16117642 (-) False LOC110531612
trnan-guu-3 mRNA upstream 488 16133605 ~ 16133678 (-) True trnan-guu-3
XM_021614905.2 mRNA upstream 53140 16186257 ~ 16219936 (-) False gba2
XM_021614906.2 mRNA upstream 53140 16186257 ~ 16219936 (-) False gba2
XM_021614907.2 mRNA upstream 53140 16186257 ~ 16220121 (-) True gba2
XM_036987440.1 mRNA upstream 97541 16230658 ~ 16232360 (-) True LOC118966005
TU883736 other downstream 219751 15912836 ~ 15913294 (-) True G775532
TU883264 other downstream 269211 15862320 ~ 15863834 (-) True G775139
TU883145 other downstream 345439 15782357 ~ 15787606 (-) False LOC110531603
TU883038 other downstream 507125 15625202 ~ 15625920 (-) True G774954
TU882761 other downstream 771726 15352307 ~ 15361319 (-) True G774702
TU884559 other upstream 693936 16827053 ~ 16828523 (-) False LOC110531626
TU884558 other upstream 694057 16827174 ~ 16828561 (-) False LOC110531626
TU884560 other upstream 694057 16827174 ~ 16828523 (-) True LOC110531626
TU884616 other upstream 732350 16865467 ~ 16866034 (-) True G776294
TU884666 other upstream 876895 17010012 ~ 17014685 (-) True G776340