RNA id: XM_021614906.2


Basic Information

Item Value
RNA id XM_021614906.2
length 4324
RNA type mRNA
GC content 0.52
exon number 19
gene id gba2
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 16186257 ~ 16220121 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCCCAGTCTCACAAAATGAACTTCAATAGTGTAGCCTACTGTAAGACTTTGCATATTGGGCGCTCTCCTAGCACTATTTCAACTTGTCACTCAGGTCGGCCGTCCGTTTAGAATTGCATTTGGACATCTACCAGAGAGTAGCCGTGCGAAAGCGTTAATCTGACATTGCTACTGTATTTTGAACAGAATGATACAGCCTACGTGACCAAGAATCTGACTCTGAAATCAAAACCGGGTGCCTACGGATTTGCAGAAGCTCTCTGTCTGACGACAAACCCACGTATATTGAGATGCTAACGGTAGTTAGCTTCAATATTCGTTGAAAACCTATAGCTAGCTAACAGGGCGACCGGTATCCATTGTCCTTCATTGCATGCGTAGCTAGCTACCTGTGCATGCTCTGCATAATGCAGGTATTTCAATAGCTCGTTTTTGTTTACTTGGACACATTAACTGGCGACAGTAGACACCACTGGCTAAACCACCTGCGCACACACGCCTCGATAGGTGCCAGTGTCCGTTCTACCACACTGGGCTATCAGGGTCTCGGATAGATACCTGCGTCAACAACGTTGTCCTCCCACTTGATGAAGATGGAGGAATAATTATCTGAGAACTACATACCTGTCCTCACCTGATGGACCTGTTGCCCAGGTTTAACAGGGGTTGTTCCAACTCAGCGGAATAGACACCGGGCAGGTTCCCGTTCGCAAGAAGAGCTCCCTTTCGTTTCTATCCGACTACCGGCTGAACATGGAGTCGGGTGACAACAGCTCAACAGCCGAGCTCATGAGTCGGTATGTGTCTTTGGAACTCGGCTATGGGGTACCGAAGGACGGCTGGCGGATCTGCTTGGCGCATGAGTTCAAGGAGAAAAGGAAGCCCTTTCAAGCCAAAGATGTGTCCCTCTCCAACATCGTTGAACACATTGGCCTTGGAGTCAGGTATCTCAAGTGGTGGTATAAGAAGACTCAAATAGAGAAGAAGGCTCCTTTCATTGATATGTTCCGAGCCATTCCTCTGAGACAGATCTATGGTGCTCCTCTTGGCGGTATTGGAGGAGGTACCATCACGCGAGGCTGGCGGGGGGAGTTCTGCAGGTGGCAACTCAACCCTGGGATGTACCACTACAAAACTGTAATCGCTAACCAGtTCACGGTGTGCCTGCGTCGGGGCGGTCAGACGGTGTACCAGCAGGTGTTGTCAGTGGAGCGCCCCCCCACGCTGCAGGGCTGGAACTGGGGCTACTGCGGAGAGTACGCCTTCTACCACGCCTTGTACCCCCGGGCCTGGACAGTCTACCCCCTCCCTGGGCAGAACGTCACCCTCACCTGTAGACAGGTGTCACCCGTCATCCCCCACGACTACCAGGATTCCAGTCTCCCAGTGGCGGTGTTTGTGTGGGACATAGAGAACAAGAATGACTACCCGCTGGACGTCTCAATCATGCTCACCATGGTCAATGGGTCAGGCCACAAGGACGACAAGAGTGGGGGCCACTGGAACGAACCATTCCACCTGGAGAAGGCGGGGGAGTCCGTGTCTGGAGTTTTGCTTCATCACTGCACCACAGTGAACCCCTACACTCTGTGCATGGCAGCGCGAGAACAGtcTGACAGGGAGATCAGTCACCAGACAGCGTTCAGCCCAAAGGGAACCTGTGGGGTGCTGTGGGGTGACCTCATCGCTGATGGACGGCTGGACTCCCCCACTGGTTCCAGTCCTCCCACCCAGAAGGGAGAGGTGGTGGCAGCAGCCCTGGCAGTGGGCTGTCCAGTGCCGGCTCAGGGCCACAACGATCTGGAGTTTAGCTTGGCGTGGGACATGCCTAACATCACATTTGGCTCCAGGGAGAGGGAACACGTCagGAGGTACACGCGTTTCTTTGGTACCAAGGCGGACGCGGCTCCCTCTCTCAGCCACCACGCGCTGACACACTACAGACTGTGGGAGAGGAGTATCGAGGAGTGGCAGAGACCCATACTGCAGGACAGCTCTCTCCCGCCCTGGTACAAATCGGCTCTGTTCAACGAGCTATACTTCGTGGTGGACGGGGGGACGGTGTGGACGGAGCTGCCTGAGGACAGCGATGTCAGTGGGGGGCTGCGGAGTGAAGACGGGGGGCTACCCGCCCAGCCTGCCATCATCAAGGAGTACGGTCGCTTTGCCTACTTAGAGGGTCAGGAGTACAGGATGTATAACACGTACGACGTGCACTTCTACGCTTCCTTTGCACTTATCATGCTATGGCCCAAACTAGCCCTCAGCCTGCAATATGACATTGCTGGCAGTGTTGTTTCGTGTGACCCGACTGAAAGACTCCATCTGATGAGTGGCAGAAATTCTCCTGTGAAGGTTAAGAACGTAGTCCCTCACGACATAGGAGACCCAGATGATGAGCCGTGGCAGCGTGTCAACGCCTACCTAATCCACGACACGGCTGACTGGAAGGACCTGAACCTGAAGTTTGTCCTGCAGGTCTACAGAGACTTCCACCTGACCCAGGACACACAGTACCTCCAGGACATGTGGCCCATCTGCCAGGCCGTGATGGAGTCAGAGATGAAGTTTGATACGGATGGAGACGGTCTGATAGAGAACTCGGGCTACGCCGACCAGACCTACGACGGATGGACCGCAACAGGACCTAGtgcGTACTGTGGGGGTCTGTGGctggcctctgtgtgtgtgatgtgtaagATGGCCAGGCTGGTGAACAATGAGGCTGCCTTCCAGCGCTTCAGAGACATACTAGACCGGGGGAGCGCCGCCTTCGACAAGCTGCTGTGGAATGGCCAGTACTACAACTACGACAGTAGTGGGCAGGATCTCTCCAACAGTGTGATGTCAGACCAGTGTGCTGGCCAGTGGTTCCTGCGGGCATCTGGATTGGGAGATGGCCAGTTTCAGGCCTTTCCTAAGGAGAAGATTTGCAGTGCACTGAAGTCTGTGTTTGACCTGAACGTGATGAGTTTCGCTGGGGGTCAAATGGGTGCGGTCAACGGTATGAGGCCGGAGGGGGTACCTGACCACTCCAGTGTCCAGTCAGACGAGGTGTGGATCGGAGTGGTGTACGGACTGGCTGCTATTATGATCcatgagggTATGTTGGAGGAGGGTCTACGTACAGCAGAGGGCTGCTACCGGACGGTGTGGGAGCGTTTGGGCATGGCCTTTCAGACCCCGGAGGCCTACTGTGAGAAGGGCATCTACCGCTCCCTGGCCTACATGAGGCCTCTCAGCATCTGGGCCATGCAGCTAGCCCTGGATACCTCACAACCACGAGACCAGGCCCCCAAGACCACCACCACACCTACTGACCAGGCCCCCCAGACCACCACCACTATACAAACTGAGACGGAGGGAGAACCCGGACAGAAGGAGAGTCAGGACCAGGGTCACATTCCGTAGTCTAAACGTTATCGAAAGTAGCtgattgcaccacagagactgagttgctgggacagggacagaggggaTACCAGAGGAAGATCTCAAGGCGAGAGAGGACATGAGGAGTATACAATTCtctttctcaaaacccattggatgagaaagccagaggtcccttccctctgaccttctcccaatgggttttgagaaggaggggatgagagaggacatgagattACAATTGAAATCTTCCCAATGAGAGGAGAGTCTGGATCAGGACTATGTTCAGAAGCCTAAATGTTGTTGAAAGATGCATATAGAACTGTTATGAATGGACCCGAGATTAATTATTCTACGTCAGAGAGGGGTGTTAGTTCTACGTAACATATTTATATCAGAAAATGCCACAATGTTGTGCCCTGCTGAACACGTCCCTGGACCAGACTGGTGTGGATGAGGAGAGACCCCAAAAAAAGGGTTGTCCCAGAACTGAGGCAGTTGAACTGAAGTACAACAACATTTGATTCTCTAAAGATTTCAAGTTCCAGAATCTAATGACTGAACCTTGCCCTCTGGCTGTCTGTCATCTCATTCTACATGGAGTTTACAATGCAACATCCTGTTCCACTGGTTGtctctgtagacacacacacacacaaccataaaTACTCAAGCTTACATCTACAGAACAAAACAAGCTCATATGCAAAGTGTGACAATgacactgtatatcactgtagcaGCTATAATCAAATTAGTCTTAATTTGAATGAGAATGaatatgtttattatttcagACTTCGACTGGCAGGTTTAACCAATGGTAGACAGAGTCTAGAAGACTTAGAATGAAGACTTGATAAAAATCGGTATTTGAAGATTGTtattctttatttctatgtttgaaTGCTGTATAAATTGTTGAAAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU883878 lncRNA downstream 35644 16150132 ~ 16150613 (-) True G775657
TU883877 lncRNA downstream 48470 16137572 ~ 16137787 (-) True G775656
TU883874 lncRNA downstream 53676 16132309 ~ 16132581 (-) True G775653
TU883872 lncRNA downstream 55018 16130749 ~ 16131239 (-) True G775651
TU883868 lncRNA downstream 56684 16128865 ~ 16129573 (-) True G775650
TU883931 lncRNA upstream 31033 16250969 ~ 16251198 (-) True G775700
TU883933 lncRNA upstream 34855 16254791 ~ 16255888 (-) True G775702
TU883938 lncRNA upstream 48059 16267995 ~ 16271059 (-) True G775706
TU883951 lncRNA upstream 85205 16305141 ~ 16305527 (-) True G775717
TU883957 lncRNA upstream 91887 16311823 ~ 16312024 (-) True G775722
trnan-guu-3 mRNA downstream 52579 16133605 ~ 16133678 (-) True trnan-guu-3
trnak-cuu-4 mRNA downstream 53140 16133045 ~ 16133117 (-) True trnak-cuu-4
XM_021614902.2 mRNA downstream 68348 16095962 ~ 16117909 (-) False LOC110531612
XM_021614904.2 mRNA downstream 68348 16095962 ~ 16117909 (-) True LOC110531612
XM_021614901.2 mRNA downstream 68561 16095962 ~ 16117696 (-) False LOC110531612
XM_036987440.1 mRNA upstream 10722 16230658 ~ 16232360 (-) True LOC118966005
XM_036987444.1 mRNA upstream 43528 16263464 ~ 16289777 (-) False LOC110531616
XM_036987442.1 mRNA upstream 43528 16263464 ~ 16289865 (-) False LOC110531616
XM_036987443.1 mRNA upstream 43528 16263464 ~ 16289866 (-) False LOC110531616
XM_036987441.1 mRNA upstream 43528 16263464 ~ 16289868 (-) True LOC110531616
TU883736 other downstream 272963 15912836 ~ 15913294 (-) True G775532
TU883264 other downstream 322423 15862320 ~ 15863834 (-) True G775139
TU883145 other downstream 398651 15782357 ~ 15787606 (-) False LOC110531603
TU883038 other downstream 560337 15625202 ~ 15625920 (-) True G774954
TU882761 other downstream 824938 15352307 ~ 15361319 (-) True G774702
TU884559 other upstream 607117 16827053 ~ 16828523 (-) False LOC110531626
TU884558 other upstream 607238 16827174 ~ 16828561 (-) False LOC110531626
TU884560 other upstream 607238 16827174 ~ 16828523 (-) True LOC110531626
TU884616 other upstream 645531 16865467 ~ 16866034 (-) True G776294
TU884666 other upstream 790076 17010012 ~ 17014685 (-) True G776340

Expression Profile