RNA id: TU884559



Basic Information


Item Value
RNA id TU884559
length 862
RNA type TUCP
GC content 0.44
exon number 4
gene id LOC110531626
representative False

Chromosome Information


Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 16827053 ~ 16828583 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CGAAAATTGGTGTAGAAATTTGCTTATGTTGTGAACTGGAAACCAAATTTAGCAGCTATTACACAGATACCATATCAGTTATAATATCATTAATGTGTTTAGAAAACAAAATAAGTCAAAATGTTGATTAAAGTCAAGACCCTCACAGGGAAGGAAATTGAGATTGACATAGAGCCCACAGACAAGGTGGAGCGGATTAAGGAgcgagtggaggagaaagaggggatccCTCCTCAACAGCAGAGGTTGATCTACAGCGGGAAACAGATGAACGATGAAAAGACAGCGGCAGACTACAAGATCCAGGGAGGTTCTGTACTACATCTGGTCCTGGcactgagaggaggggaggtccTCCACTGTCCCACGAGCCTTCTGCTCGCCTTGTAACCACCACGCTTGCCTTAGCCCCGGTTAGACGTTgcccttaggcacagatctaggatcagcttaacCCTCCTCAAATCCAAACCGTAATCGTTATGGGCGACAAATGCAAAACGGACCTTGGATCAGTGATTGTGGGCAACTTCAGCTTTATCCCCTTGGAACCGGCCAATGTAGACCTTCTCTGAGACATATTACAACTGTAACGAGTTGTTGTCCTTTTGTGTTGGGAGGATCGCCATGTCAGCACTCTCTCTTGTCCCTTCCTCGTTTGAGAGCATCAAACTGATGCAGATGTTACGTTTACAATGCGTGAAAGTGTGAGAAAGTATTATTCTGTAGAGATAGATTCATGTAATGGTTTAGTTTGTCATTAAAACATCAGTTATCCGCGATGGATGTTGCATTGTCATTAATGATGTGTTTAATGTTATGGGATTCAAACACCACACCAGTCAACAACATTTATTTTACC

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU884600 lncRNA downstream 4424 16822282 ~ 16822629 (-) True G776278
TU884599 lncRNA downstream 5179 16821515 ~ 16821874 (-) True G776277
TU884527 lncRNA downstream 123149 16703566 ~ 16703904 (-) True G776214
TU884513 lncRNA downstream 142770 16684074 ~ 16684283 (-) True G776202
TU884512 lncRNA downstream 143247 16683348 ~ 16683806 (-) True G776201
TU884604 lncRNA upstream 13750 16842273 ~ 16842505 (-) True G776282
TU884606 lncRNA upstream 18885 16847408 ~ 16847682 (-) True G776284
TU884607 lncRNA upstream 20385 16848908 ~ 16849146 (-) True G776285
TU884608 lncRNA upstream 21779 16850302 ~ 16850610 (-) True G776286
TU884566 lncRNA upstream 23785 16852308 ~ 16852628 (-) True G776246
XM_036987454.1 mRNA downstream 75759 16595063 ~ 16751294 (-) True LOC110532940
XM_036987453.1 mRNA downstream 75760 16595063 ~ 16751293 (-) False LOC110532940
LOC118966166 mRNA downstream 245248 16580259 ~ 16581805 (-) True LOC118966166
XM_036989264.1 mRNA downstream 253161 16555795 ~ 16573892 (-) True LOC118966165
XM_021614919.2 mRNA downstream 386905 16427419 ~ 16440148 (-) True LOC110531619
XM_021614929.2 mRNA upstream 58005 16886528 ~ 16891710 (-) True LOC110531628
XM_021614940.2 mRNA upstream 80315 16908838 ~ 16913877 (-) False LOC110531631
XM_021614939.2 mRNA upstream 80315 16908838 ~ 16913879 (-) False LOC110531631
XM_021614938.2 mRNA upstream 80315 16908838 ~ 16913947 (-) False LOC110531631
XM_021614937.2 mRNA upstream 80315 16908838 ~ 16913948 (-) True LOC110531631
TU883736 other downstream 913759 15912836 ~ 15913294 (-) True G775532
TU883264 other downstream 963219 15862320 ~ 15863834 (-) True G775139
TU883145 other downstream 1039447 15782357 ~ 15787606 (-) False LOC110531603
TU883038 other downstream 1201133 15625202 ~ 15625920 (-) True G774954
TU882761 other downstream 1465734 15352307 ~ 15361319 (-) True G774702
TU884616 other upstream 36944 16865467 ~ 16866034 (-) True G776294
TU884666 other upstream 181489 17010012 ~ 17014685 (-) True G776340
TU884682 other upstream 196857 17025380 ~ 17025813 (-) True G776355
TU884794 other upstream 416911 17245434 ~ 17245797 (-) True G776461
TU885013 other upstream 491092 17319615 ~ 17320373 (-) True G776652

Expression Profile


TU884559 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 10.
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TU884559 Expression in each Bioproject

Bar chart with 19 bars.
TU884559 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 75.
End of interactive chart.