RNA id: XR_005053196.1


Basic Information

Item Value
RNA id XR_005053196.1
length 3897
RNA type mRNA
GC content 0.47
exon number 8
gene id LOC110531630
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 16892343 ~ 16907677 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCCATTGGAAACAACAGACGGTGGTCTATCTTCATTTAGTTATACAATCTTTGATTATACATTAATTCAGACGTCACATCCAGCAAGTAGAGAAGGCGGGGGAAATGTGGTTTTGGAGAAAGAGATGGCGGAAGCTGATGTGGATCTTGAATCAGGGAGTAGCGTAcagtgctgagaatgttccttaTCTTGTAGCACTATGGGTTATTAATGAGGAGAAGCGGATCGGATTACCAATCTTGAAGAACCCATTTGAGATATCCAAATTGGTGGAGAAAGTGCTGGacatcttcctttccttctcccccctacCCCTCCTGGCCCCTCCCATCCGGCTGGTTTCTGCTGCCATGTGGAAGGTGATGAAGCAACGCGATGTAATGCATTATGGGACGCTGGAGGAGTTTGTGACATCCTGCTGTGAGGCTGTCCCTGGCCTGCTCACATCTAGACACCAGGCCAAGCTGGCTCTGGGGCTGAGATcacggCTGATCTTAGAGCTGTGCAATGGCTCAGACCCACCAGATCCAACGGTTATCCTTACCCAGCTGGAAAGGATCCGTGCTCCCAACCCGTCCTCTGCCCTGAAAAAGGATGTGAAGATTGAAACAGCAGTGACCAACCTCCGGGACCTGGTTGAAAGCTTTCTGAAagaccccacagagagagaactattCTACAAGGTGGAGTTTCTGTCAGAGTATGGGCCTCAGTTTGACCAGGAGCTGGAGAAACTGCTGTGGGAGTTCCTGCTCCGACTGGACCAGCTTCTCCCTGTGCCCAACCTGGCTCAGACGGTGTCGTGGCTCACTGCTGCCCCTCCTGTCCTGGAGGAGTGTGCGCAGGCTGCCTCCCAACCCCAGCTCCTGAGGACCCTGCTCCAGCACCAGATCTGCCTGGGACACCTGGATTCTGCAGcttctctctctccgtgtATGGGCGActacctcctctcatcactctccctccctccctctggaaGAGTGCAGCAAAGCGTCAAATCAAGATCTAAGCCTGCCTTGGTTTCCACCCCAAGCCCTCTGTCTTTAACCCCATTAACCGATTACAGACAAACGAACTTGTCATTGCCCGTCGCACCTGTGATTGGCGGGATTTTTAACGAAGACCTTCCAGTCATGGCTTCAGCCAATAAGAGGGCAAGAACTTTCCAGGAAGACGTTGTTATCCAATCGGTTTCAAGAGATGTGGAGGAGGACGCTGAGTCAACGGAGAGGTCCAAATATACATGGGTCAAAAGCAGAGAAGAGGAATCCGAAGAGGACGAGGAGATCATGGTCatgagaagagggaggaagaggaggagtgtgagagacagagggagtgaaagagtGCTCAGGAGAGGGCGTGGGGGGGAGTTtgttagagatggagaggaggatatgACGAGcggtagagatggagagactgagagagacctTCTTAGGGACTGTTTGGTCCAGTTGGGGATCGCAAACCTCAAGGTTCCGGAAGACCATCGCCTCTATTCTTACATCACAGCCTGTCTCCTCAACAAACCCAGGGTGCTCATCCCCCGACTGACTTCAACAGACATCCCTGCTCTTTTGAAGTCACAACCTCCTTCCTGAGCAACGGGACACCAACAGCAGGGGTAGGGAGCTCTCAATGGGGACAGAGGCCCAAGTTGCCGGCGATAACGGCATGTCAGCTTCCTTCGACCTGGCAACGGAAGTTGAGTGACAGGTCATTGACCCTAGATATGGGGCTTCCAGCATCAGCTGACAAAGAATGCTGCTTCGGGAGAAATCAAAAGGCgaatatcacagccaatcacaacactggcgGGGCACGGTGGCTGAGGTGAAAGCCTCAGTGGGAGCCAAGGACCTTAGGTGAAACTCCCATCTGGTTCAGTTTATATGAGCAGGAGCCTGGCGGCTCCATCTGATTCACAGGGATCTTGTTCATTTCATGAGCAGGTCCAAGGCCTTGTAAATACCTCAGATAACCCTTCATGGGCGGTAGACTGTAACACGTTACACTGTACCTCAACCCTTCATGGGCGGTACACTGTACCTCAGGATAACCCTTCATGGGCGGTACACTGTACCTCAGGATAACCCTTCATGGGCGGTAGACTGTACCTCAGATAACCCTTCATGGGCGGTAGACTGTACCTCAGATAACCCTTCATGGGCGGTACACTGTACCTCAGATGACCCTTCATGGGCGGTAGACTAACAAGGCTCAAGGAATGTAGCTCATTCTGAGCAGGGGTGACGGAAGCGAAGTGAAGCCTGTATGTCTGTTTAGTTCATTTTATTTTCTGGGGTGAAGGACAATAGGTGGAGGAGCCCTGTATGAACGGACATAAGTGTAACTGTCTTGGAATGTTTCATTTTACCTAATGGTAACTAACAAAAGGCCTACAAGTTTAAGAGATGACATGTTACCATAAGAAACCCATTGCGGGTAGTAACTGTAAAACGTCTATACTTTACCCCAGGATACCCATTACAAGAGGTGCTATAGAAACAAGGTAGCGTTATTCACGTCAGGGAAATTTATCAAAAAGTATCAGCCTATTTGCAACGCACCTTATTATTGTATTTTTGTTTTCATGGTTTGCACATGATTATGAAAGTGTATGTAATTCTGTCCTTGTGATGcacttgtctattaatgttctgtgtcttttgtgtggaccccaggaagagtagctgctgctttagtAGTAGCTAATGAGGATCCGAATAAAATACCCTGAAAAGTACTACTGTAATCACATGGAAGAAACAATGTTTAGCATACCACTAGTTTGCATCAAGCCTGACTTGAGAATTTTGGTCATACTTTAGGTTTTCATTGACATCACAGTGAATATCCTCATTGGGCATACCTTAGGTATtcattaacattacagtaaatGTCCCCATTGGTCATACTTTAGGTTCTTATTGACATCACAGTAACTGTCCTCATTGTTCATGCACCTGGGGATAAACCTTTTGATATGGTGAATCCAAGCCTGACATTCTGTAGGTCTGGATTAATGTCATTGCACACCTCATCCATGGCCTGAAGGATGGTGGCACGCTCATGGGGATGTGTTCCTAATGTGTACAAAATGTTACAAACACCTATTTTCATGATCGTCataccaggtgaatccaggtgaagcttTGATCCCCTTTTGATGTcaattcaatcagtgtagatgaaggggagaaggcAGGTTAAAGAcgcatttttaagccttgagacaattgagccatggattgtgtatgtgtgccattcagaaaaTGTGTAggtgcttttgaacagggtatggtagtaggtgccaggtgctcttgtgtcaagaactgcaacgctgctgggtttttcacactgaaCAGTTTTCCATGTGTATCAGGAATGCTTGTGACACAttgtagtccatgccctgacaaacaGAAGCTGGTCTGAGGGCAataaggggtgcaactcaatattgggaaggtgttcctaatgttttgtacactaagttTCTTCTTCACAAACATATATTTTCATTATGTAGTTCTCAATCTGTAGTAGACAAACCTGTAGGTTTACCAAACGGTTAAGCGATTATCAATTAAGAGCAGTCTGATTAAGAGTAagagtaaaatgtattttaacaaaAGAGAATCATATTAAAAGTAGTGTGGACATTGTGAAAGGCAATTGCTTTATATAAACATATATTGCAATGTGGAACATGTATTTCTAGCTGAAACAGTGTTTGGTAAAATAGTGACCTATAATTGTGTGTTGTACTTAAGgcaattgaaaatgtgcttagagATTTGAAAACTGCCGTTTTGATCTGTTGAGGTTTGTACTAAGTTGTGATCACAAACTTGTGAAAATTGCACCGAAgcgactggggggggggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU884291 lncRNA upstream 596 16889730 ~ 16891747 (+) True G776004
TU884290 lncRNA upstream 2866 16886570 ~ 16889477 (+) True G776003
TU884334 lncRNA upstream 7543 16884539 ~ 16884800 (+) True G776045
TU884333 lncRNA upstream 9933 16882141 ~ 16882410 (+) True G776044
TU884289 lncRNA upstream 15039 16871108 ~ 16877304 (+) True G776002
TU884343 lncRNA downstream 58 16907735 ~ 16908573 (+) True G776050
TU884340 lncRNA downstream 1163 16908840 ~ 16910749 (+) True G776047
TU884322 lncRNA downstream 44711 16952388 ~ 16953584 (+) False acin1b
TU884323 lncRNA downstream 44735 16952412 ~ 16953584 (+) True acin1b
TU884381 lncRNA downstream 83217 16990894 ~ 16991267 (+) True G776079
XM_036987456.1 mRNA upstream 52890 16828786 ~ 16839453 (+) False LOC110531624
XM_036987457.1 mRNA upstream 52890 16829021 ~ 16839453 (+) True LOC110531624
XM_036987455.1 mRNA upstream 71001 16777534 ~ 16821342 (+) True LOC110531623
XM_021614924.2 mRNA upstream 298738 16589215 ~ 16593605 (+) True LOC110531622
XM_021614922.2 mRNA upstream 303958 16583398 ~ 16588385 (+) True LOC110531621
XM_036987466.1 mRNA downstream 6393 16914070 ~ 16923893 (+) False LOC110531629
XM_036987465.1 mRNA downstream 6393 16914070 ~ 16925975 (+) True LOC110531629
XM_036987458.1 mRNA downstream 18535 16926212 ~ 16953583 (+) False acin1b
XM_036987459.1 mRNA downstream 18535 16926212 ~ 16953583 (+) False acin1b
XM_036987460.1 mRNA downstream 18535 16926212 ~ 16953583 (+) False acin1b
TU884223 other upstream 208852 16683194 ~ 16683491 (+) True G775945
TU883556 other upstream 549533 16339694 ~ 16342810 (+) True LOC110532939
TU883487 other upstream 641479 16248730 ~ 16250864 (+) True LOC110532936
TU883488 other upstream 652585 16237455 ~ 16239758 (+) False LOC110532936
TU883479 other upstream 652809 16237455 ~ 16239534 (+) False LOC110532936
TU884850 other downstream 389378 17297055 ~ 17305515 (+) False LOC110532942
TU884851 other downstream 389378 17297055 ~ 17305515 (+) False LOC110532942
TU884828 other downstream 472948 17380625 ~ 17394121 (+) True G776487
TU885190 other downstream 750520 17658197 ~ 17659145 (+) True G776818
TU885503 other downstream 1094212 18001889 ~ 18002182 (+) True G777111

Expression Profile