RNA id: XM_036987475.1


Basic Information

Item Value
RNA id XM_036987475.1
length 2855
RNA type mRNA
GC content 0.45
exon number 15
gene id LOC110532941
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 17050749 ~ 17064251 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCACAACCTGTCCTGAGTATCTCTCCTCAGTGGCTGAACCCTGGAGACTCAGTGACTCTGAGCTGTGAAGTTGACAAGACGTCTACAGACTGGAGGTTCTCCTGGTACAGGACTGTTCCCTACAGAGCTGGGTTACCCTCCCTATCAGACAAGTCTTGCTCTCCATGTGTTTATGGAGGGGATAGCTGAAGCTGAGGCTAGCTGGGATACCAGTCGTTACCATAACTTAGCTTTGGGGGGAGGCATCTGTGCATGGTGGTTGTAAAAATGAACTAACATCTGCACATTCTGATACCAAACTGATCTAATCTCAGACCTCTATTCTCATTCCATCCTCCTTTCCTTCAATAAAGAGGAAGGAACCAGTGTGAGGTCATGTAGCCAATCATAAGAAGAAGTTGGTCAGAAAATGAACACGCCATCAACCGCTACTCTTTTTTTCTCACAGCCTTTGTACGTTTCTCAATCATTTTCTCTATTTTTCTGTGTGACGGTGAAGAGGTGTGATCTAAACAGTCTGTCATATAGGAAGTAGAGGGGTTTGTCAGAAGAACTGTAGTTGTAGAGAAGGTCACCTGTCAGTGGGACAGAATGGAGAACACATTGCTCTGTGTGCTGCTCTTGCTGAGTATCCTCATCTACTGTGGACACTGTGATGAAGATGATGAGAGACATGTAGCTGTTCTGACCCTCCAACCCAACTGGACCCAGATATTCATTGGAGAGACTGTTACTATGAGATGTgacatacagggaggaggagactctGACTGGAACTACAGATGGTATAAGAATAGTCAGTTAGTGATCCCCTTTAACACAAAGACTGAGTACAGAATCAGTCCTGTCTACATGTCTAACAGTGGTTCATATACCTGTGAGGGTGTGAAGGGAAACAAGTTCTCCAAGACCAGTGAAGCTGTACAACTGAAAGTGTCTGGTAAACCCAAGGCTGTCCTGAGTGTCTCTCCTCAGTGGCTGAACCCTGGAGACTCAGTGGCTCTGAACTGTGAAGTTGACAAGACGTCTACAGCCTGGAGGTTCTCCTGGTACAGGACTGTTCCCTACAGAGCTGGGTTACCCTCTCTATCAGACAAGTCTTACTCTCTACAGCCCCTATCTGAAAATGTGACTAGTGAAGACTCCTACACTCTGATCCCTGCTGGTCCTACTCACACAGGAGGATATGTGTGTAGAGCTGGGAGAGGAGACCCAGTCTATGACACACACTACAGTGAACCTCAGTTTCTCTGGTCAGGAGATCTGCAGCCTTCAGTGTTTCTCAGAATAAGTCCCAACACAACTCAACACTTTAGATCAAAGTCTCTCTCACTGAGCTGTGAGCTGAAGGGGAACTCTACTGGATGGAGACTGatgagatacacagagagaggagtagagtcaGGGTGTGTCTCTAACTGGGGATCAATAACAGGGTCTACATGTACCATCAGGTCCACATACACATGGCACAGTGGAGTGTACTGGTGTGAGTCTGGATCAGGAGAGTACAGTAATGCTGTCAACATCACAGTGGATGCTGGTAATGTGATCCTGGAGAGCCCTGTCCATCCCCTGACTGAAGGAGACTCTGTGACTCTGCGCTGCAAATACAGGACAACCAGCTCAAACATCAAGGCTGATTTCTACAAAGATGGAGTACTCATCAAAAATGAGACCACGGGAGAGATGACCATCCCTGCAGTATCCAAATCAGATGAAGGATTCTACACATGCAAATACCCTGACAAGGGAGAATCACCAGAGAGCTGGATGACAGTGAGAGCCGTAGCTCCTGGATCCTCTACACCAGTCCTAGTAGGAGTGGTTGTGGGTCTGGTTGTTGCTGGTGTTCTACTGGTCATTCTCCTCGTCCTGCTGTGGAGATTTAAAAACGCCAAAGGTTCCTGTTTTAACAGAATATTATTacaCCCCCAGACCCAGAGCACCAACCAGGACCCCCAACAGGACCAAGGATCTACCCAGGGTCAGGCTCCTGATGCTGTGTATACACGTCTGCAGCATGGTGGTGGTCACGTCTACGATACGATCAATCCCTCAGACAACTATAATAatgATGCTAGTGTTGGACCAAGTCATTTGACATACGCCCAGATTCAACTCACAAAGTTGGACAAGAAAAATAATGAAAAGCCAGCTGATCCAAAAGAAAGTCCAGTCTACTCTGAGGTGAAGACAGGAAAAGCCACAAAAGACCAAAGCCAAGAAGAAGAGAAACAACCCCACCTGAGACAGATTCAGTCTATTCTCAACTGAAGCCAGGCACAACCCCAGGtccttgagggagatggagggacacACCATCAGAGGAGACGTAGGAGCCATCTGGGAACATGGGTTATGCATGCTGgatgcacgcaagcacacacacatgcaggcatgctcacacacacacatgcacacgaaCACACAAATACAGAAAAAACACATTCACTCTTACAAGTGAACATGTGAAGtattccaaaaacacatgttttcatgTGATCACGTGATATTAtttgaagttaatgtgataacgtGATCTTATTTGAAGTTAATAtgataacatgtgacaacatgtgACAACATATGACATGGAACTGCACATGTGAAAACGTGATTTCACGTTACATTTCTCATGTGTTTGTTCtgtgagggacacacacacaataacaccttGTACATGAAGGATTTGTATGTTATTTTAATTTACCAGATAAATACAACAAATATATTCTATTTAACCCTGTGTGTATTACTGTAACAGCTTAAATAAAGGATATGTTGTAATGATGATACATCTTATAAACAGCTACAGTAATTCTATCTGCTTTGTATTGTGTATTGAATTGTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU884708 lncRNA downstream 695 17049787 ~ 17050055 (-) True G776377
TU884703 lncRNA downstream 5280 17045264 ~ 17045470 (-) True G776372
TU884702 lncRNA downstream 7680 17041977 ~ 17043070 (-) True G776371
TU884701 lncRNA downstream 9391 17041080 ~ 17041359 (-) True G776370
TU884680 lncRNA downstream 27768 17022644 ~ 17022982 (-) True G776353
TU884689 lncRNA upstream 14948 17079199 ~ 17080885 (-) True LOC110531640
TU884724 lncRNA upstream 51334 17115585 ~ 17115820 (-) True G776393
TU884727 lncRNA upstream 64346 17128597 ~ 17129233 (-) True G776396
TU884753 lncRNA upstream 129931 17194182 ~ 17194503 (-) True G776421
TU884756 lncRNA upstream 134623 17198874 ~ 17199142 (-) True G776424
XM_021614952.2 mRNA downstream 7027 17028602 ~ 17043723 (-) True LOC110531638
XM_021614951.2 mRNA downstream 7036 17028602 ~ 17043714 (-) False LOC110531638
XM_021614950.2 mRNA downstream 7038 17028602 ~ 17043712 (-) False LOC110531638
XM_021614947.2 mRNA downstream 47657 16982710 ~ 17003093 (-) True LOC110531636
XM_036987468.1 mRNA downstream 84527 16953773 ~ 16966223 (-) True LOC110531634
XR_005053198.1 mRNA upstream 12679 17076930 ~ 17080792 (-) False LOC110531640
XM_021614955.2 mRNA upstream 242039 17306290 ~ 17317711 (-) True LOC110531642
XM_036987485.1 mRNA upstream 257180 17321431 ~ 17326579 (-) False LOC110531643
XM_036987486.1 mRNA upstream 257180 17321431 ~ 17327104 (-) False LOC110531643
XM_021614956.2 mRNA upstream 257180 17321431 ~ 17327614 (-) True LOC110531643
TU884682 other downstream 24937 17025380 ~ 17025813 (-) True G776355
TU884666 other downstream 36065 17010012 ~ 17014685 (-) True G776340
TU884616 other downstream 184716 16865467 ~ 16866034 (-) True G776294
TU884558 other downstream 222189 16827174 ~ 16828561 (-) False LOC110531626
TU884794 other upstream 181183 17245434 ~ 17245797 (-) True G776461
TU885013 other upstream 255364 17319615 ~ 17320373 (-) True G776652
TU885001 other upstream 281227 17345478 ~ 17354347 (-) False G776642
TU885002 other upstream 281227 17345478 ~ 17354347 (-) True G776642
TU885036 other upstream 353396 17417647 ~ 17431354 (-) True LOC110532943

Expression Profile