RNA id: XM_036987480.1


Basic Information

Item Value
RNA id XM_036987480.1
length 2148
RNA type mRNA
GC content 0.43
exon number 2
gene id LOC118966007
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 17144013 ~ 17185719 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCTGAAGCCTACCCACCTCCAGAGTCTGGTGACAAAGTCTGCCGCCCACCCGCAGGTGCTGGGGCGTGTGGAGAGACCACTCCTCAGAGCCAACatggggggaagaggagaggcgaTGATGGCGAAGAGCCGGGAGAAACACTCCAAAGTCTTGGACCTCATCAACCACTTCGAGGGGAACAGGGACACATCAAAAATACAAGACACCATTGCAAAAAGTAGCCTTATCGATAAAGGAACTCCTGCAAGGTATCAGCTGGAAACAAAGAAACAGAATCTAGATGATGAAGGCCTGCTCAGAAGATGGACCTTTGGAGAGAGAGATCACAGTAAGCTCAACAAAACCATTCTGATAGTGGGAGAGACAGGAACAGGGAAGTCAACTCTGGTCAATGCCATGGTCAATTACGTCCTGGGTGTAGAGTGGGAGGACAAAGTCTGGTTTGAGATTGTTGAAGAGGAAAAAAGACTTCAGACTGAAGCTCAAACTACAGCAGTCACTGTTTATGAGGTGTTTGGGTTTGAAGGCCAGAgagtccccttctctctcaccatcATTGACACTCCTGGGTATGGAAACACTAGAGGGATTAAAGAAGACCAACTGATCGCTAAAAAGTTGTTTGAGTTGTTTAGATCTGTAGATGGAATTGATCAACTTGATGCTGTGGGTTTAGTGATGAAGGCAGCTATGAATAGACTCAATGACAGACAGAAGTACATCTTCAATGCAGTTTTGTCTTTATTCGGCAAAGACATGGAGAAAAACATTGTAGCCCTTATCACACACTCAGATGGGAGGCCCCCAAAGAATGCCCTTGATGCTATTATAAGAGCAAACGTTCCCTGTGCTAAAAATGACAGGAATCGACCTGTTCATTTTGCGTTCAACAACTGTCAATGTGATGTATTTGATAAGGAATATGAGGATTATGAGGAATTTGTGTCTAATCAGAAGACAGTCTGGGACAAGGGAGCAAAGTCCATGGACAAGTTTTTCGAATATAAAATGGAACCAAAAAGCGTGAAGATGACTGAAGGAGTTCTGAGAGAGCGAGAACAACTGGAGGCGTGTGTCAGCAACCTACGCGAGCGGATCCACATGGATGATCTGAAGCAGGATGAAATCAAGCAGACTCAAAAAGAACTTTGTAAACACAAGAAAGACGTGGAGGAAAACAAGGACTTTACATATACTGTTGAAGAGCCGTACAAAGAGAAGTTACCTACAGAAGGGGGGAAGGCAACCACCTGCACAGTGTGTGAAGAGAACTGTCACTATCCAGGCTGCAGGTGTATCAAAGTTCTCTCATGGTGCAGTGCAATGAAGAACTACCACTGCACTGTGTGTACTGGCAAATGTCATTACACCAAGCATGTCAAAGGAAATGAAAAATATGTTCTCAAGACACGGGTGGTTCTCAGGACGCATGGGAAATTGAAAAAGAAGTATGATATTAATGAGAAGGCGGCTGGGGAGAAAGAGACACTGAtcagcaaacttcagacagagTTGGAGCAGTTCACACTCCAGAAGTTCAGACTGGTGGAGGAATCCTACCTGTGCCTCGTCATACTGGAAGAGATCGCTTTGAAGTCCCTCCCACTGTCCACTGCTCAGCATCTTGGCTTCCTGATTGACAAgatgacagagacaggaaacacagagaagGTTCAGAAACTGAAGGAGATGAAGAAAAGAGCTGAGGAGGAACTCAATGGAGCTTGACATTACTTTTAAGCTGGTGTGGGTAAAGGTTGGAAATATTTCTGGGGAAAGTAGTACTGAAACATATTCTGCAGCAAAAACAATGATGTGGGAAAACACTATGAACACATTGGATAGAGATGAAAAGAAAAGCGTTGTTCTTCTTCGTGCTTTTTCTCTCCAAGAAATACTGTACACTTTATGTTATCCAGATTATATGCCATATAAGACTTTATATAAGGAGGACTACATTTTAGTCCAGGTGAAATTAGATTTTTGTTTGTCACTGGAATTGCATTTTATCTGAACGTATCATTGATCATCTTAATTGAAAGTTAAGGGAATTTAACAATCAAAAATCTTTTATGATACGTTTGTTTTGAAGTGTTTCGCACATACTGATGAAAGTGGACACTGAACTATTTGTGTATGTTGTCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU884430 lncRNA upstream 44277 17123414 ~ 17123957 (+) True G776126
TU884448 lncRNA upstream 52437 17115584 ~ 17115797 (+) True G776144
TU884447 lncRNA upstream 52824 17114969 ~ 17115410 (+) True G776143
TU884446 lncRNA upstream 53335 17114512 ~ 17114899 (+) True G776142
TU884440 lncRNA upstream 70064 17097916 ~ 17098170 (+) True G776136
TU884788 lncRNA downstream 55198 17240917 ~ 17242538 (+) True LOC118966176
TU884792 lncRNA downstream 58514 17244233 ~ 17244440 (+) True G776459
TU884837 lncRNA downstream 90721 17276440 ~ 17276641 (+) True G776496
TU884849 lncRNA downstream 118393 17304112 ~ 17305515 (+) True LOC110532942
TU884854 lncRNA downstream 120062 17305781 ~ 17315579 (+) True G776508
XM_036987481.1 mRNA upstream 45182 17105612 ~ 17123052 (+) True LOC110531641
XM_021614948.2 mRNA upstream 153549 17006102 ~ 17014685 (+) False LOC110531637
XM_021614949.2 mRNA upstream 153549 17006201 ~ 17014685 (+) True LOC110531637
XM_036987472.1 mRNA upstream 190937 16966777 ~ 16977297 (+) False LOC110531635
XM_036987482.1 mRNA downstream 16898 17202617 ~ 17222400 (+) True LOC118966008
XR_005053440.1 mRNA downstream 55151 17240870 ~ 17242550 (+) False LOC118966176
XM_036989265.1 mRNA downstream 68547 17254266 ~ 17265417 (+) True LOC118966167
XM_036987483.1 mRNA downstream 80311 17266030 ~ 17269034 (+) True LOC118966009
XM_036989266.1 mRNA downstream 106751 17292470 ~ 17305629 (+) False LOC110532942
TU884223 other upstream 484743 16683194 ~ 16683491 (+) True G775945
TU883556 other upstream 825424 16339694 ~ 16342810 (+) True LOC110532939
TU883487 other upstream 917370 16248730 ~ 16250864 (+) True LOC110532936
TU883488 other upstream 928476 16237455 ~ 16239758 (+) False LOC110532936
TU883479 other upstream 928700 16237455 ~ 16239534 (+) False LOC110532936
TU884850 other downstream 111336 17297055 ~ 17305515 (+) False LOC110532942
TU884851 other downstream 111336 17297055 ~ 17305515 (+) False LOC110532942
TU884828 other downstream 194906 17380625 ~ 17394121 (+) True G776487
TU885190 other downstream 472478 17658197 ~ 17659145 (+) True G776818
TU885503 other downstream 816170 18001889 ~ 18002182 (+) True G777111

Expression Profile