RNA id: XM_036987482.1


Basic Information

Item Value
RNA id XM_036987482.1
length 1722
RNA type mRNA
GC content 0.41
exon number 4
gene id LOC118966008
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 17202617 ~ 17222400 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGAGCGAGCAGACTTGGCTCACTTGCTAAGTCAGATTCATAACTCACTTCACGGCATAGTGATAGCAGCAGTTGAAAGACAAGATGGGGAACAGCAAAACAACCCAATGCCAGAAGAAAGAGAAGCAGGAGAAAGAGAAATGTTATGACCCCGGAGACAAGACGCTCAAGTTTGTGAACAGAGATGATGACATTATTGGCGGGGTTATATATGAGTCTCTGAGGGCAGAGATGTCCTGTGGTCACGCTGTCACCCCAGAGTCATTGACCGGATGGTGCCTAAGCCTACTCGACAAGAAAAAGTGCACATTCATTTGCCCTGCATCACGTGAAGATGGTGAAATGTGTGGTGCCGAGTGGTCTTACACAGAAGTGCGTAAACTGGCTCTTCTGACTCCTGAGGAGATGAAGAAATTTGAGGAGACAATGGCTGACTTGGTTTCAGCCCAGAACTCTTACAAATCGTGTCCAGGCTGCAACTCATATGTTGCAAGGACTGACCTCTCCAACCTGAGAGTCCACTGCACAGTGTGCTCAGCAGAAAAAGGCCAGCTGTACGAGTTCTGCTGGCTGTGCCTGCAGCAGTGGAAAGGTTCACAACAGAGTTCTGACCACTGTGACAACGATGACTGCATGACTGATCTGGAACTGCTGAAGACCTGCCCTACTGTCACATTTGCTGATGTCCAGGGGGTCACCGGCTGCCCATCCACACGTGCCTGTCCCACCTGTGGTGTATTGTTAGAACACGATAAGACTGGCTGTAAAAATATAGAATGCAAGAATTGCAATAAAGAGTTCTGTTTTGTTTGCCTTAAGCTCACAAGTGAGTGCTTGAAGACCAGCAAATATTTCATAGGCTGCTCTGCTGGTGTGGCCCCCAGGCAGACTTCTATACCCTCATGGAGTGATAAATAAAGATTTTATCCAGGTGTACCACTTTCCTTCCTACGGGCACTTGAATTACTTACACTGATGCAGAACAGGCATAATAGCACAGAAATTGGCATGTATTAACACAAAAATATTATTGAAAATGTCTTGGTACCTTACTCAAATTGTGTATAAAGTCAATATGTGCAAgaatgtgtaataatgtattagaTTCTAtaatgtttcatgattaacaatcCATATACTACTGATTATTATCTgatctatttctgttgttttatcTGTGCCTGAAACAAAAAGAAAAACGCAaatagaaataataataatttcaaaaATGTAATCAATGGTCAACAGAAATGTTTGCCCCCTTAAAATAACCTGGATGTTTTAGAAAAAGTTTTATGAATGCGGTTGTTGTATGAGACATACATTTCTGATAATATTTCTATAATCATGTTAttgtcaaccctaaccctaggtaTTGTTCAAGGGGTCCTCTTCTAAATATGCTACCAGTATTGTGATATTGTTTCCTTTATCAATGATTTCCCACTGGGTACAAGAACAATGAATCATCAAACAAATACACATATTTAATAAGAGTtatataataatgataataatgatagtaTTAACAGAAATGATAGTAATAATAACACATTTAATTTGTATAGCGCTTTGCATGACTCAACACTTTTACATAAACCAGCCAAACAAGATCACatgatccttggtgtccacatcaccaacaaactaacatggtccaagcacaccaagacaattgtgaagagggcacgacaaaacctattcccccataggagactgaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU884469 lncRNA upstream 18936 17183031 ~ 17183681 (+) True G776165
TU884468 lncRNA upstream 20295 17182057 ~ 17182322 (+) True G776164
TU884467 lncRNA upstream 20970 17180945 ~ 17181647 (+) True G776163
TU884430 lncRNA upstream 78660 17123414 ~ 17123957 (+) True G776126
TU884448 lncRNA upstream 86820 17115584 ~ 17115797 (+) True G776144
TU884788 lncRNA downstream 18517 17240917 ~ 17242538 (+) True LOC118966176
TU884792 lncRNA downstream 21833 17244233 ~ 17244440 (+) True G776459
TU884837 lncRNA downstream 54040 17276440 ~ 17276641 (+) True G776496
TU884849 lncRNA downstream 81712 17304112 ~ 17305515 (+) True LOC110532942
TU884854 lncRNA downstream 83381 17305781 ~ 17315579 (+) True G776508
XM_036987480.1 mRNA upstream 16898 17168234 ~ 17185719 (+) True LOC118966007
XM_036987477.1 mRNA upstream 16900 17144013 ~ 17185717 (+) False LOC118966007
XM_036987478.1 mRNA upstream 16900 17158483 ~ 17185717 (+) False LOC118966007
XM_036987481.1 mRNA upstream 79565 17105612 ~ 17123052 (+) True LOC110531641
XM_021614948.2 mRNA upstream 187932 17006102 ~ 17014685 (+) False LOC110531637
XR_005053440.1 mRNA downstream 18470 17240870 ~ 17242550 (+) False LOC118966176
XM_036989265.1 mRNA downstream 31866 17254266 ~ 17265417 (+) True LOC118966167
XM_036987483.1 mRNA downstream 43630 17266030 ~ 17269034 (+) True LOC118966009
XM_036989266.1 mRNA downstream 70070 17292470 ~ 17305629 (+) False LOC110532942
XM_036987487.1 mRNA downstream 116872 17339272 ~ 17346251 (+) True LOC110531644
TU884223 other upstream 519126 16683194 ~ 16683491 (+) True G775945
TU883556 other upstream 859807 16339694 ~ 16342810 (+) True LOC110532939
TU883487 other upstream 951753 16248730 ~ 16250864 (+) True LOC110532936
TU883488 other upstream 962859 16237455 ~ 16239758 (+) False LOC110532936
TU883479 other upstream 963083 16237455 ~ 16239534 (+) False LOC110532936
TU884850 other downstream 74655 17297055 ~ 17305515 (+) False LOC110532942
TU884851 other downstream 74655 17297055 ~ 17305515 (+) False LOC110532942
TU884828 other downstream 158225 17380625 ~ 17394121 (+) True G776487
TU885190 other downstream 435797 17658197 ~ 17659145 (+) True G776818
TU885503 other downstream 779489 18001889 ~ 18002182 (+) True G777111

Expression Profile