RNA id: XM_036989265.1



Basic Information


Item Value
RNA id XM_036989265.1
length 850
RNA type mRNA
GC content 0.42
exon number 9
gene id LOC118966167
representative True

Chromosome Information


Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 17254266 ~ 17265417 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GATTTATGATGCCATGGATTCCATATGCACAACAGACACAGGCTACCATCCCCATGGTTTGATTAATCAAGGGGCAACCTGTTATTTGAACAGTGTGCTGCAGGTGTTCTTCATGACCAAGGACTTCAGAGAGGCTGTTGAAAGTGAAGTGTTTCCTACTGGTCAAGAACAAGAGACCATTGATCACAAGCTTAAAAGGCTGTTTCAAAAATTAAAAGAAAAAGAAGCTGACACAAAGGACATTTCTTGGACATTGGACATTCAAACCGTATATGAGCAACGTGACGCTGCTGAGTTTTTTGAGAAGATTTTAAACGCGGTCAAGAATAATgtgtctaagATCTTCGAAGGACAATTGTCGCACACTATCTCCTGTGCAAATAGTCATATTTCCAATATTGAACCTGGTCCATTTTGGGTTCTGCCCCTCTCCATGGACGTAACCTTAGGCCCTGGTCAAAGCTACAGTGTGAATGACGGTTTTGAGGAGTTTTTTGAGAAATCAACTATCACTGGGGACAAGCTGTACTGTGCTAAATGCAATGAAGAAGTGGAAGCAACAACTGCATGTAAGATGGTACATCACCCAGAGATTCTGACTCTGCTACTCAAGAGGTTTGAGTTTGACTACCATAGGATGACATATGTCAAAATCAACTGCTCTGTGGACGTTCCTCACAAATTACAGACAGAGAATGGGGCATATGAACTCTATGCAATTGTGGACCATGAAGGAAGTCTAAGAAGTGGACATTACACTGCTACAATCAGGTCCTATGAGGATCAGAAGTGGTATTTGTTTAATGACAGCAACGTAAGCCTGATCGCATTGGAACCAAACTTAAGGTAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU884792 lncRNA upstream 9826 17244233 ~ 17244440 (+) True G776459
TU884788 lncRNA upstream 11728 17240917 ~ 17242538 (+) True LOC118966176
TU884469 lncRNA upstream 70585 17183031 ~ 17183681 (+) True G776165
TU884468 lncRNA upstream 71944 17182057 ~ 17182322 (+) True G776164
TU884467 lncRNA upstream 72619 17180945 ~ 17181647 (+) True G776163
TU884837 lncRNA downstream 11023 17276440 ~ 17276641 (+) True G776496
TU884849 lncRNA downstream 38695 17304112 ~ 17305515 (+) True LOC110532942
TU884854 lncRNA downstream 40364 17305781 ~ 17315579 (+) True G776508
TU884862 lncRNA downstream 55193 17320610 ~ 17321790 (+) True G776516
TU884865 lncRNA downstream 63546 17328963 ~ 17329323 (+) True G776519
XR_005053440.1 mRNA upstream 11716 17240870 ~ 17242550 (+) False LOC118966176
XM_036987482.1 mRNA upstream 31866 17202617 ~ 17222400 (+) True LOC118966008
XM_036987480.1 mRNA upstream 68547 17168234 ~ 17185719 (+) True LOC118966007
XM_036987477.1 mRNA upstream 68549 17144013 ~ 17185717 (+) False LOC118966007
XM_036987478.1 mRNA upstream 68549 17158483 ~ 17185717 (+) False LOC118966007
XM_036987483.1 mRNA downstream 613 17266030 ~ 17269034 (+) True LOC118966009
XM_036989266.1 mRNA downstream 27053 17292470 ~ 17305629 (+) False LOC110532942
XM_036987487.1 mRNA downstream 73855 17339272 ~ 17346251 (+) True LOC110531644
XM_021614973.2 mRNA downstream 922321 18187738 ~ 18190442 (+) False LOC110531656
XM_021614974.2 mRNA downstream 923336 18188753 ~ 18190442 (+) True LOC110531656
TU884223 other upstream 570775 16683194 ~ 16683491 (+) True G775945
TU883556 other upstream 911456 16339694 ~ 16342810 (+) True LOC110532939
TU883487 other upstream 1003402 16248730 ~ 16250864 (+) True LOC110532936
TU883488 other upstream 1014508 16237455 ~ 16239758 (+) False LOC110532936
TU883479 other upstream 1014732 16237455 ~ 16239534 (+) False LOC110532936
TU884850 other downstream 31638 17297055 ~ 17305515 (+) False LOC110532942
TU884851 other downstream 31638 17297055 ~ 17305515 (+) False LOC110532942
TU884828 other downstream 115208 17380625 ~ 17394121 (+) True G776487
TU885190 other downstream 392780 17658197 ~ 17659145 (+) True G776818
TU885503 other downstream 736472 18001889 ~ 18002182 (+) True G777111

Expression Profile