RNA id: XM_021614955.2


Basic Information

Item Value
RNA id XM_021614955.2
length 2265
RNA type mRNA
GC content 0.54
exon number 10
gene id LOC110531642
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 17306290 ~ 17317711 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tcctcctcttccacctgtCTCCTTGGTAGCTGCTGGGTCAAAAAGCAGAAGTTCATCAGCTGATCGGCCTGTGCACCTTCAGACTCAGAAAGGAAGTCGAGCCAAGTCAGAGCAGAGAACGCGGCGTGACTGGCAGAGGGGGAAGGTCATCAGTGGAGAGCGACAACGCGCACAGAGAGTAATAGTGAGTAAAAACAATCAGGGATGCGCAATTGACAGGAACGTTAGATAAAAACCTGCGACTCATAGGCTTTAGAGAAGAAGTGCAAGAGGACCCCCAAGGGAAGGAAGCCGAGTTCACCTATAGCGCATCTGGAGAAGATGTCACCAGAGGGACCCTCATAGCTGGAAAACGACTTTAACTCAGCTCTTACAACCAATCCTTGACAGCCGCCTGGTCCAATCACTACTCACTTCCCCACATCCCCTCCAATACTAACTCCCCCCCACACTTCCTGTGCAATGGCATCCTACAGCCCCGCCCCCACACAAGAGCCCGCCACCAACGGCGGGTCGACCTCGCTCAAGTCGGGCGGCTCAGGGGGCGACAACGATTCTATGAAGCTGAAGAAGGAGATCTCTCTCCTGAACGGCGTGTGTCTCATCGTAGGCAACATGATTGGCTCGGGCATCTTCGTCTCGCCTAAAGGAGTCTTAATCTACAGCGCCTCCTATGGGCTGTCGCTGGTAGTGTGGACCATCGGCGGTATCTTCTCTGTGTTCGGGGCCCTGTGCTATGCCGAGCTGGGGACCACCATCACCAAGTCAGGGGCCAGTTACGCTTACATCCTGGAGGCCTTCGGAGGGTTCCTGGCCTTCATCAGGCTGTGGACCTCCCTGTTGATCATAGAGCCCACCAGCCAGGCGGTCATAGCCATCACCTTCTCTAACTACATGGTGCAGCCCGTCTTCCCCACCTGCATAGCCCCCTATCTGGCTAACCGCATGCTGGCTGCAGCCTGCATATGTTTGCTGACCTTTGTGAACTGTGCCTATGTGAAGTGGGGGACGCGTGTCCAGGATTTCTTCACCTACGCTAAGGTCATCGCCCTCATCGCTGTCATCATCACCGGCCTGGTCAAGATAGGACAAGgtCAGACGCAGAACTTTGAGGGTATGTTTGAGGGCTCGTCCACGGATCCAGGAGACATAGCCCTGGCCctgtactctgctctgttctcctactCCGGCTGGGACACACTCAACTTCGTCACCGAGGAGATCAAAAACCCAGAGAGGAACCTGCCCCTGGCCATCGCCATCTCCATGCCCATCGTCACGGTGATCTATATTCTGACCAACGTTGCCTACTACACCGTGCTGCCCATTCCTGCCATCCTGGACAGTGACGCCGTGGCTGTGACGTTTGCAGACCAGGTGTTTGGCGTGATGAACTGGACCATCCCTCTAGCGGTGGCTCTGTCCTGCTTCGGAGGACTCAACGCTTCTATCCTGGCTGCCTCCAGGCTGTTCTTCGTGGGCTCCAGGGAGGGCCATCTCCCAGACTACCTGTGCATGATCCATGTCACCCGTTACACCCCTATCCCAGCGCTGCTCTTCAACGGTGCCATGGCGTTGGTCTACCTGTGTGTTGAGGACATCTTTAAACTGATCAACTACTACAGCTTCAGCTACTGGTTCTTTGTGGGCCTGTCTATCCTGGGACAGCTGTACCTGCGCTGGAAACAGCCAGACAGAGTCAGACCCCTCAAGctCAGTCTGTTCTTCCCGATCATCTTCTGTTTCTGCACCTTGTTCCTAGTGGTGGTTCCCATCTACAGTGACACCATGAACTCTCTGATTGGCATTGGCATCGCCCTATCAGGAGTGCCAGTCTACTTCCTGTGTATCTATACTCCCGCCACCAAAAGGCCCATGTGGCTCCGCAGGTTCTTTGCCAACTTTGGTCTGTTGATTCAGAAGGTGTGCTATTCTGTTGTGACCGAGTTAGACGTCATAGACAAGTTGGAGTGAAGATATTAAAACCAACCAACACACTGCTGCCGCCGCCAACTGAAGACGCACAAAACTAAAGGCTCAACGACACCACCTACTGGCCAGTATCGCCCTCGGCTACCAATCAGAGGGCGGAGTCAAACAGCAGCCATTCATTGGACCAAATCTCTGGCCAACCAATCATTGCCGTATGTTCATTGGACTATGGGGTTGTTCTACGGCCAGGATGACACTCCAGTTGCCTCTGACATCAGAGGACATTCCACGCACTACAgaataattaaaaataaaaatattcctGTTCTCAAA

Function

GO:

id name namespace
GO:0003333 amino acid transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0015171 amino acid transmembrane transporter activity molecular_function

KEGG:

id description
K13867 SLC7A7; solute carrier family 7 (L-type amino acid transporter), member 7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU884998 lncRNA downstream 3826 17301809 ~ 17302464 (-) True G776639
TU884994 lncRNA downstream 8934 17297052 ~ 17297356 (-) True G776635
TU884976 lncRNA downstream 35183 17270823 ~ 17271107 (-) True G776620
TU884779 lncRNA downstream 82297 17223789 ~ 17223993 (-) True G776446
TU884756 lncRNA downstream 107148 17198874 ~ 17199142 (-) True G776424
TU885016 lncRNA upstream 31794 17349505 ~ 17350131 (-) True G776655
TU885034 lncRNA upstream 72465 17390176 ~ 17397053 (-) True tmem88b
TU885062 lncRNA upstream 96891 17414602 ~ 17415162 (-) True G776701
TU885070 lncRNA upstream 120955 17438666 ~ 17438944 (-) True G776709
TU885079 lncRNA upstream 141460 17459171 ~ 17466795 (-) True G776715
XR_005053198.1 mRNA downstream 225498 17076930 ~ 17080792 (-) False LOC110531640
XM_036987476.1 mRNA downstream 242039 17050749 ~ 17064251 (-) False LOC110532941
XM_036987475.1 mRNA downstream 242039 17050750 ~ 17064251 (-) True LOC110532941
XM_021614952.2 mRNA downstream 262567 17028602 ~ 17043723 (-) True LOC110531638
XM_021614951.2 mRNA downstream 262576 17028602 ~ 17043714 (-) False LOC110531638
XM_036987485.1 mRNA upstream 3720 17321431 ~ 17326579 (-) False LOC110531643
XM_036987486.1 mRNA upstream 3720 17321431 ~ 17327104 (-) False LOC110531643
XM_021614956.2 mRNA upstream 3720 17321431 ~ 17327614 (-) True LOC110531643
XM_036987488.1 mRNA upstream 12623 17330334 ~ 17339133 (-) False LOC110531645
XM_036987489.1 mRNA upstream 13123 17330834 ~ 17338833 (-) False LOC110531645
TU884794 other downstream 60493 17245434 ~ 17245797 (-) True G776461
TU884682 other downstream 280477 17025380 ~ 17025813 (-) True G776355
TU884666 other downstream 291605 17010012 ~ 17014685 (-) True G776340
TU884616 other downstream 440256 16865467 ~ 16866034 (-) True G776294
TU884558 other downstream 477729 16827174 ~ 16828561 (-) False LOC110531626
TU885013 other upstream 1904 17319615 ~ 17320373 (-) True G776652
TU885001 other upstream 27767 17345478 ~ 17354347 (-) False G776642
TU885002 other upstream 27767 17345478 ~ 17354347 (-) True G776642
TU885036 other upstream 99936 17417647 ~ 17431354 (-) True LOC110532943
TU885078 other upstream 140966 17458677 ~ 17463822 (-) True G776714

Expression Profile