RNA id: XM_036987488.1


Basic Information

Item Value
RNA id XM_036987488.1
length 1931
RNA type mRNA
GC content 0.49
exon number 10
gene id LOC110531645
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 17330334 ~ 17339133 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCAGTCTGTTCCAACAACAATACGACATTTGTTGTTAGTTCATTAGCTAGCAATATGCGGTaaagaaaaaaatacaacaaacttGAGTTTATTACTTTAAGTAAATTAGAATGGTTTAGCAAATAATAGTTTAATATTATCCAGCTAAGTTACAGTATACCCCCCAGGCCAGCCGGTGTCGTGTTGTCAATGTACTCTTCTCGAATTCTTCTAACAACCACTGGAAAAGATGGCGGAAGTGGAGAAGGATGGTGATCCTGCGACTGACAAAGATGATTTACAAATTTTAAAAGAACTAGTGGATGAGTTGTATCATTTTCGGGATCATTACTTTGagactcactgtgtggaggaTGCAAAGAGGAAATCGAGTGATGTGGCACGGGAGATGGAGAAGACACTAAAGAAGCTGGAGGAGAAAGGAgAGTCGTATAAGCACAGTGCTGAGTTCCTGCTGCTGCGGGGTCGCTCCCTGGGGGTGTCTCCGGAGTATAGCACCACCGCTGGGGAGTGCCTGTCCCGGGCCGTGAAGCTGGAGCCTGGACTAGTGGAGGGCTGGAACACACTGGGGGAGCAGTACTGGAAGAAAGGAGACCTGACCACCGCTAAGACCTGCTTCACTGGAGCCCTGCAGCAGAGTAAGAACAAAGTATCTCTGCGTagtctgtccatggtgctgaggcAGCTGCCAGGAGGGGGCGGTGATGAGCAGGGGAAGAGGGTGCTGGAGAGCGTGGCCATGGCCAGGCAGGCTGTACAGCTGGACGTCACCGACGGCACCTCCTGGTACATCCTGGGGAACGCCTACATCTCCCTGTTCTTCACCTGCAGACAGAATCCACAAATGTCTCAGCAGGCTCTGAGTGCCTATGCACAggctgagaaaGTGGACCGAACAGCAACCTCCAACCCCGATCTGCACTTCAATAGAGCCACGCTGTTTCAGTATGAGGAGATGTTTGGGTCTGCCCTGGACGGGTACAGTCGCGCTGCGGCCCTGGACCCTGCGTGGGAGGAGCctccagagagggagaggcagctgCTGGAATACCTGGAGAAACTCACAACACTCACAGAGAACAAGGGGAAGGTGAAGGCCCGGCGCCTGCGAACGATGGTCTCCAACCTCAGCCCGTTGGCCTTGGGGCCATGCTCCTCCCCTCAGTTCCGCTCCCCCGCAGGCCGCGTTGGGAGCCTGGAGCCCCGGACCCTGTCTTCCCTGACACACGGCCACAACGCTGGGGTGGCTGCCCTGGGAAAGGTTGTGTTCAGCCTGGCCTCAGAGGGACGCATGGCCTTtaCGTTCGGCATGGTGGACAGTGAGGAAACATGCTGCGTGGTCATGGTCTATAACACAGCAGACAACTGGGGAGTTCTGATTGGAGACTCTGTGGTCATCCCGGAGCCACAGGTCAAACGCCACAGTGTAGCACACAgggggggggcagacagacagggagctaGGAAGGAGCGTGAAGAGCCTGTGTGCCTgtttttgattatttatttttttatcttagTTTTGTAAATAGTAGATCCTTGTTTGTTAAATAGTCTTTAGGAATACACTGTTTGTACATATTTATAAATATTTTTGTTTGTATTTTGTTAAAGtgggagggaggctgggggaTTTTGTAAATTACCGACTACTAATATGATCATTAATTGTGGTGAAGATGGTGTCCGACATGGGTTCAAGACATTAAAACAAACATGTCTCCAATGTGGACATGATTTAAACGTTTGCTTTATCATTAGCTTATGTAGTTCATCATCTTTCACCATGATGTTAGTCAAACCTTCCATAGTGAAAAATAACACTGTCATGCTGTATTTTATTGAAAAATAAGTGCAAACATTAAGTTGTAAATCAAAGTAACTTCTGGTAACAAAAAATGCAACCATTAAACTACAATATCAAACTGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU884998 lncRNA downstream 27870 17301809 ~ 17302464 (-) True G776639
TU884994 lncRNA downstream 32978 17297052 ~ 17297356 (-) True G776635
TU884976 lncRNA downstream 59227 17270823 ~ 17271107 (-) True G776620
TU884779 lncRNA downstream 106341 17223789 ~ 17223993 (-) True G776446
TU884756 lncRNA downstream 131192 17198874 ~ 17199142 (-) True G776424
TU885016 lncRNA upstream 10372 17349505 ~ 17350131 (-) True G776655
TU885034 lncRNA upstream 51043 17390176 ~ 17397053 (-) True tmem88b
TU885062 lncRNA upstream 75469 17414602 ~ 17415162 (-) True G776701
TU885070 lncRNA upstream 99533 17438666 ~ 17438944 (-) True G776709
TU885079 lncRNA upstream 120038 17459171 ~ 17466795 (-) True G776715
XM_021614956.2 mRNA downstream 2720 17321431 ~ 17327614 (-) True LOC110531643
XM_036987486.1 mRNA downstream 3230 17321431 ~ 17327104 (-) False LOC110531643
XM_036987485.1 mRNA downstream 3755 17321431 ~ 17326579 (-) False LOC110531643
XM_021614955.2 mRNA downstream 12623 17306290 ~ 17317711 (-) True LOC110531642
XR_005053198.1 mRNA downstream 249542 17076930 ~ 17080792 (-) False LOC110531640
XM_021614960.2 mRNA upstream 25850 17364983 ~ 17373648 (-) True tm4sf5
XM_036987490.1 mRNA upstream 50957 17390090 ~ 17397228 (-) False tmem88b
XM_036987491.1 mRNA upstream 63245 17402378 ~ 17431842 (-) False LOC110532943
XM_036987492.1 mRNA upstream 63245 17402378 ~ 17547902 (-) False LOC110532943
XM_036987494.1 mRNA upstream 63245 17402378 ~ 17547902 (-) False LOC110532943
TU885013 other downstream 9961 17319615 ~ 17320373 (-) True G776652
TU884794 other downstream 84537 17245434 ~ 17245797 (-) True G776461
TU884682 other downstream 304521 17025380 ~ 17025813 (-) True G776355
TU884666 other downstream 315649 17010012 ~ 17014685 (-) True G776340
TU884616 other downstream 464300 16865467 ~ 16866034 (-) True G776294
TU885001 other upstream 6345 17345478 ~ 17354347 (-) False G776642
TU885002 other upstream 6345 17345478 ~ 17354347 (-) True G776642
TU885036 other upstream 78514 17417647 ~ 17431354 (-) True LOC110532943
TU885078 other upstream 119544 17458677 ~ 17463822 (-) True G776714
TU885132 other upstream 254339 17593472 ~ 17594666 (-) True G776762

Expression Profile