RNA id: XM_021614960.2


Basic Information

Item Value
RNA id XM_021614960.2
length 1897
RNA type mRNA
GC content 0.44
exon number 6
gene id tm4sf5
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 17364983 ~ 17373648 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACACATGGGCAGGTATCAAAGGGCAATTCTAGAATTGACTCCTGattttgttctgttctgtttagTTCCATTCCACAAGCCGGCAAGGGACCTGTGTTCCGCTTCCAGGGGTCTACACGAAGAACTGAAGGGCTGAAGAGAAAGAGACGATTTATTGTCCAGCACAGTGGAATATACTGGACACAGTGGCTCCTGAGACCAACAACAGCCCTGTCATCTCAGCCTCTTCttcctcctgctgtgtgtgtcagtctgtcttgACCGTGAAGTCTTTTCCCCTCCTCTTTTCTATCTACCATCTCTTCTTTAGTCTGGGTCTACCCTCCACTGTCTCGGTCTCTGTCATACCCTAACTGCAGTATCACTGAGCTATCTGGTGACGGAGTAAAGACAGTATGTGTTGCACTGGGAAGTGTTCTCGTCTGGTGGGCCTGATCCTGTTGCCCTCGGCGTTCGCCTGCATCATCTCCAACATCCTCCTGTTCTTCCCCGACGGAAAGCAGCAGGACAGCAGTCATGTCTCCCTGCAGGTCTGGCTCATGGGCGGCCTCATCGGAGGGGGAATATTCATGCTGTGCCCCAGCTGTTCGGCTATCAGGGCCGGGGGCAAGGGTTGCTGTGGAAATGGTTGCTGCGGAAACCGTTGCAGAATGCTGAACTCTGTCTTCTCGGCTGCTTTTGGTTTGGTCGGAGCTATCTACTGCACTAGTGTCTCTTCTGCGGGACTGGCCATTGGACCTAAATGTCAGGTTGCTAGTGGAAAATGGGAATATCCCTTTGAGGACCTACCAGGTGGGAACAGCAGTTACCTGTTTGACCACTCTCTGTGGAACCTGTGTGTGATCCCTGCCAATGCGGCCCTGTGGCACCTGGTCCTCTTCTCCATCACGCTGGGCCTGGGGGGCCTGCAACTCATCCTCTGTGGTATCCAGGTGGTCAACGGCTGCATCGGCTGCTTCTGTGGGGACTGCCGTGATGACAAGGAGGATGATGGTGGattgtgagatggagagagagaagaagtagaGAGGACTGCCCTGCAATGCCACAGCCTATTTTCATGACgactagtgctgagcgattagtgctttttcaGGTCGGTTCAGTTTTGGGTTCGATTATTAAAAATGATCACGGTTTTTGATTTTGCGTTCGATTATATAATACACTATACGTTATgtgtgttgaatgctgtaacaacacagaataaaacatttaatacaaGTCCCATGGTGGTAGTGACACTCctttactgcttatcacttattaaccataatttattcacattactttactttatGACttcattatttcattccaagtcagttcagttcaggcttgatctgatttaatctctacagaaactgcacattgagctcacagaaaagaaccgaactaaatggaattcaaatcATTTAACCAACGTCTTTCGATAAgttgttttaaaaaaacaaaaaaataaccaACATTTTGGTTAATCGCTCAGTACTACTGATGACATACCAGCACCAGGATTGCCAATCACTTACTacacaacttttttttaaagtgccTATCTGCCAGGAGTTTTCCCTTTTGTGTTTGAAGCATATTGTCTACTTTTGATATGTTCAAATCATGCCAGTGTGCCATATCAATCATAGCCATTGTAGTTCTTTAATCTCAAAACTGCCATGTCATTGTTGTAACTCTTGCTTCTGTTTCACGTGTTGCCCATGGAAACATCATACAGTACGTCATCTGAGGATTCCTCAGGAGTTTCTCAAGTTATTTTCCATTCTTTATTTCATTTCTTTTAAGCAACCATTTCTTTAACATGatcttttgtatatatttttttgtataatCACATACGTCAAAACAATacaaataagcaataaaactttTGGGAAATTA

Function

GO: NA

KEGG:

id description
K24920 TM4SF5; transmembrane 4 L6 family member 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU885016 lncRNA downstream 14852 17349505 ~ 17350131 (-) True G776655
TU884998 lncRNA downstream 62519 17301809 ~ 17302464 (-) True G776639
TU884994 lncRNA downstream 67627 17297052 ~ 17297356 (-) True G776635
TU884976 lncRNA downstream 93876 17270823 ~ 17271107 (-) True G776620
TU884779 lncRNA downstream 140990 17223789 ~ 17223993 (-) True G776446
TU885034 lncRNA upstream 16528 17390176 ~ 17397053 (-) True tmem88b
TU885062 lncRNA upstream 40954 17414602 ~ 17415162 (-) True G776701
TU885070 lncRNA upstream 65018 17438666 ~ 17438944 (-) True G776709
TU885079 lncRNA upstream 85523 17459171 ~ 17466795 (-) True G776715
TU885083 lncRNA upstream 103435 17477083 ~ 17481116 (-) True G776719
XM_036987488.1 mRNA downstream 25850 17330334 ~ 17339133 (-) False LOC110531645
XM_021614959.2 mRNA downstream 25852 17330834 ~ 17339131 (-) True LOC110531645
XM_021614958.2 mRNA downstream 25853 17330834 ~ 17339130 (-) False LOC110531645
XM_036987489.1 mRNA downstream 26150 17330834 ~ 17338833 (-) False LOC110531645
XM_021614956.2 mRNA downstream 37369 17321431 ~ 17327614 (-) True LOC110531643
XM_036987490.1 mRNA upstream 16442 17390090 ~ 17397228 (-) False tmem88b
XM_036987491.1 mRNA upstream 28730 17402378 ~ 17431842 (-) False LOC110532943
XM_036987492.1 mRNA upstream 28730 17402378 ~ 17547902 (-) False LOC110532943
XM_036987494.1 mRNA upstream 28730 17402378 ~ 17547902 (-) False LOC110532943
XM_036987495.1 mRNA upstream 550422 17924070 ~ 17925788 (-) True LOC118966010
TU885001 other downstream 10636 17345478 ~ 17354347 (-) False G776642
TU885002 other downstream 10636 17345478 ~ 17354347 (-) True G776642
TU885013 other downstream 44610 17319615 ~ 17320373 (-) True G776652
TU884794 other downstream 119186 17245434 ~ 17245797 (-) True G776461
TU884682 other downstream 339170 17025380 ~ 17025813 (-) True G776355
TU885036 other upstream 43999 17417647 ~ 17431354 (-) True LOC110532943
TU885078 other upstream 85029 17458677 ~ 17463822 (-) True G776714
TU885132 other upstream 219824 17593472 ~ 17594666 (-) True G776762
TU885184 other upstream 281946 17655594 ~ 17655980 (-) True G776812
TU885186 other upstream 282340 17655988 ~ 17656325 (-) True G776814

Expression Profile