RNA id: TU885034


Basic Information

Item Value
RNA id TU885034
length 1341
lncRNA type sense_over
GC content 0.47
exon number 4
gene id tmem88b
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 17390090 ~ 17397228 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTCAACTGCAGTCAGGGAGAGAACAACGGATGAAAAAACAAAGCACACTGACTTATCCCTGAAGGGACCGACTACGAGTGGAAACAGCAGGAGATCACCACTACGGCTACAGAAGGCCAACATACCAGCATGCCACTACAAAACAAGCTGGTCCCAACTTCATTGACAAGAGTGTGAAGGAATCTGAACTGATGCATGAAGGACTAGAAGCGTGAGAACCGCAAGGGGAGATTTGAGaaaagacgggagagagagagagagaagttgttAACGTTTGTGAACATTGTCCACCTGCTTGTATACGTGGTTAAGAAGAGAGAGAGTTTCAGTGTAACTTccaagaagagaagagaaccagCAAGGATCAGAGAGAGGCTCTACCCGGCTCCACGCAATgtgCGCCCTCAGGGGACGACCCGCTACTGTTCGGACCTGCTGAGCGACGGGGGCTGTGTGGCCCTCCTAGTGGTCGGGTTCCTCCTGGTCACCCCCCTCCTGGTACTGGCTCTGGCTGCCTACTGCCGCCTGGCTCGTCACCTCCAGTTGGGGCTCTGCTTCATACCGTACTCCAGGGCCGTCTACAAGAACCTGCCCGCTACAAAACACCATGGCCTGGGAGGGaggatggagggaaatagagaggaagaggcagaaagagagaaagacaaggggAGGAgatgggatgagagggaggaaatGAAAGGAGGGAAGAATTACattagagaagggaggaggagaaagaggacaaAAACTACAGCAGCCAAACTAATATCTCTACAGAATAGGCACCATAGTTTAAAGAAGAAAGTGAACCATTCCTCTGGCCTGAGTTCAACCGAAGTAACCTCCCTCACACCACCATGTTATCTGCTATCCCTTTAATGTAAAAGTTGCCTTTAAACCATTGATATATTGTGTTCGAAAATGTTATAGCAGACGAAAAGGGAGCAGGGATTTTTACACTGTTCTAGAAGTAGAGGCAATAAATCAACAGCAAGCATCTCAATCACACCGCAGACTACGTTTAGCTTATGCAGTGAAACACTGGGCATTAATGAAGAATATATCACTGCCATGTGTCCACATTTCATAAAACATTTGAGTGATTTAGCAGGAAGCTCTTTCCAGAGCAactggggttaagtgccttgctcaaaggtaCATAGACACATGTTTCACCTATTAAACACTCTGGGAtttaaaccagcaaccttttacttacctgcccaacgctcttaaccactaggctacctacacCTCTTTAAGATATCAATAACATTGATTCAAGACAATGTCTTTAAGCATTTATACACCATGAAGGACATTTTGTGTTTAGCATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU885016 lncRNA downstream 40045 17349505 ~ 17350131 (-) True G776655
TU884998 lncRNA downstream 87712 17301809 ~ 17302464 (-) True G776639
TU884994 lncRNA downstream 92820 17297052 ~ 17297356 (-) True G776635
TU884976 lncRNA downstream 119069 17270823 ~ 17271107 (-) True G776620
TU884779 lncRNA downstream 166183 17223789 ~ 17223993 (-) True G776446
TU885062 lncRNA upstream 17549 17414602 ~ 17415162 (-) True G776701
TU885070 lncRNA upstream 41613 17438666 ~ 17438944 (-) True G776709
TU885079 lncRNA upstream 62118 17459171 ~ 17466795 (-) True G776715
TU885083 lncRNA upstream 80030 17477083 ~ 17481116 (-) True G776719
TU885039 lncRNA upstream 122890 17519943 ~ 17614179 (-) True G776678
XM_021614960.2 mRNA downstream 16528 17364983 ~ 17373648 (-) True tm4sf5
XM_036987488.1 mRNA downstream 51043 17330334 ~ 17339133 (-) False LOC110531645
XM_021614959.2 mRNA downstream 51045 17330834 ~ 17339131 (-) True LOC110531645
XM_021614958.2 mRNA downstream 51046 17330834 ~ 17339130 (-) False LOC110531645
XM_036987489.1 mRNA downstream 51343 17330834 ~ 17338833 (-) False LOC110531645
XM_036987491.1 mRNA upstream 5325 17402378 ~ 17431842 (-) False LOC110532943
XM_036987492.1 mRNA upstream 5325 17402378 ~ 17547902 (-) False LOC110532943
XM_036987494.1 mRNA upstream 5325 17402378 ~ 17547902 (-) False LOC110532943
XM_036987495.1 mRNA upstream 527017 17924070 ~ 17925788 (-) True LOC118966010
XM_036987496.1 mRNA upstream 609580 18006633 ~ 18129483 (-) True LOC110531650
TU885001 other downstream 35829 17345478 ~ 17354347 (-) False G776642
TU885002 other downstream 35829 17345478 ~ 17354347 (-) True G776642
TU885013 other downstream 69803 17319615 ~ 17320373 (-) True G776652
TU884794 other downstream 144379 17245434 ~ 17245797 (-) True G776461
TU884682 other downstream 364363 17025380 ~ 17025813 (-) True G776355
TU885036 other upstream 20594 17417647 ~ 17431354 (-) True LOC110532943
TU885078 other upstream 61624 17458677 ~ 17463822 (-) True G776714
TU885132 other upstream 196419 17593472 ~ 17594666 (-) True G776762
TU885184 other upstream 258541 17655594 ~ 17655980 (-) True G776812
TU885186 other upstream 258935 17655988 ~ 17656325 (-) True G776814

Expression Profile