RNA id: XM_036987492.1


Basic Information

Item Value
RNA id XM_036987492.1
length 9319
RNA type mRNA
GC content 0.54
exon number 21
gene id LOC110532943
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 17402378 ~ 17547902 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGCTCCGggatctgtggtgtgtgtgtgtgtgtgtgtgtatgtttgagcgagagtgtgtgtgtatgcactctATTCCTTTCCTTTCTTTGTTTGACTACTGAGTAGAAAAAAAgcgagacagaaaaagagagtgtgtgtgtgtgtgtgtgtgcgtgagagagagagagagcgagagagagagagagagagggagagagggtgagggaaagagggagagtaaAGAAAAAGGAGATCCAAAGCGAGAAGCACACACTTTCTttctggaagagagagagagagacaaagacgcAATTCTATTTATGTATGATTTGTAGCCTTTTTAAAACACTGCATGCTTCTGACACCAGTGTCAGGTTGGGgggctggttgtgtgtgtgtgcgtgtatgtttttttgttgtgtgcattggtctgtcactgggtgtgtgtgtgaggggaagCCGGGTTCCCGGCCTCCGTGTCCGTCTGGTTTAAAGGGAACAGAAGGGAACAACACAAAGCTAGGGGCTGAATGTCGCTGCTGCTGGAGATTTGCTGAACTAGCCTGCCTtcgctgctctgctctgctctgccctagATAGCTAACACAACACACCCTCTGGATATTACTACAACTTAATCAGCACCTCTCAGCCTAACCCTGAACACGGAggcgcagacagacagacagacagacagagagacagacagacagacagagagacagaggtatgGTAATATGTTGGTCAACTGAAGCTCTACAACGTCCCTGCCACTGACCAGGCTGAAGATGTGTGATACAGGGCTGAAGAGATCCCAGAGATGATTGGCTGTAGAAGCTGAGACTTGACGAGACAGAGGATCTTGAATTAGGTGCTATTCTGAaagacctctgtatttctctcctctcgttccctctctagCCTAACAGGCTGTATAGTATTGGTGTTGAAGACAGGTGTGTAGTCTTCCCTTGGTCTTTGGTGTGTGGCCTTCTCTGTGCTGCAGTGGAGGGCTTCACAGACACAGCTACTGTGgcTGGATGCATCACGCAGTAGAGCAGTTTGGCGGGCGTGGCACACGGGACTCCTTCTCTCTGGACGGACTCAGCCGGGTACCATGGACTCCCGTGGGCAACCGCGCCACCTGGGTGCAACCTGCCAGGTTTTCGCCAGGTGTCAATCAACACCAGCTCCTCCCCCATCTAGCGCCAAGTCACATGGGCGGATTGAACCATCCCAGTAAATTCTTCAATAATGGGCCCATGCAGGTTCGTGGCGGGGAAAAGCTGGAGCTGTCCCAGGCCATGTTACCTAGCCTACAGAGAGGGGACCAGCAACGCCCCCTTCCTCCCCCCCACCGGGTGTGGGAGCAGTTGGGTCAGCTGTATGACTCCCACCCCCCTCCTCATTCACTTGTACCCCTACCCGGCGACCACGCCCCCCGCCTGCACAGCGGTGGATACAGCACTAGGCCTCCTACCCACCTGCCTTCCAGACCCAATCAGCTACTGAAGTATGAGGGTCCTCAGGAGCACCATGTTCCCAGGGGTCCAGCATCACTGGGTGATGATATGTGGTCTCAGgtacagcagcagcagaggggTTACCCAGGGAAAATGCTGGGGGGGCAGCTGAAGAGGCCGGCACCCCCTCTCGGGGAGCACTCGGTCATCCAGCATACCCCGCCCCCCTCCCTTCACCCCTCCTCTCGCCCCAATGAGGACTGCCCCAGTCCtagcaagaggaagaggaagaggagttcCGAGCAGATTCCTCACCCCGGCATCCAGAGGTTCTCTGGCCCAGGAGGACAGCAGCAGCCCCCGGcccacctcccccctcccccacccaaaCCTGCCTTCTGGAACCCCATACACAAGGGGAACGTCCCCTGGGCCCAGCCCGAACGCAGGAACGGGCCTCCAGAGTTCCAGATCAGACCTGACTCAGCCAAGTCGGGTCTGGGCGGCTACACCTAcaaacctccccctccctccgccCCTTCGCCAATCTCCCCAACCCGCATCTCCTCCCCGGGAGACTACCCCCAGGGGCGCGGAGCCCTCCCCCCACCCCACAAGCCCCAGTTCCCACCTCAGGCCCTCAATCAACCCCCCCACAATAACCACCCCCAGTACCCAAAACAACCAGCTCCAGCCCCGCCTCTCATGGGGATGGAGCCCCGGGGAGGTCCTCCTACCCCCCAGAGAGGCCCTACCACTGGGGGCCGAGGAATCAACAACCATcccccctctcatcctcctcacCACCAAGCTCTAGCAAGGGGGGACAGTAGAGGAGACAGGGACAGTAGGGAGCCCCCCCAACCCTCACCAGCAAACCACACCGGCGTGCCTTACAACACCCACCCTCACTTCCAGCCCCACGCGGGGCTGGGGCACACGGCCCCCCGCCCCCCTGCCCCTGCCTGCAGCACCGCAGTACCTCCGCAGCACAACCccaccaccccacaccatgaagCGTGGAGGCCCCAGGGCCAGGGCAGGCCACAAAGCAACCACCCCCTGGAGTCAGGTCTCTACAGGGCAGGGCCGGTATCTCAGGGGCAGCATCAGAACCAGGTCGGGGAGACCCGGGGTCCTGCACCCCTCCAGCATCATCAGCACGTCAGCCCCCCTCTGGCCTCCCCCATACCTCCTACCAGGACGCCAGTCATCACCCCCACCTTCACCCCCCATCCCCCCTGCTCACAGTCACATAACAACCGCTACAGTAGTAGTATGACTGGACCTGCACTCTCCACTGTGACCACAGCGCCCCCTGCTGTGTGTTCAGCTAACAACAcccccagcagcagcaggagaggcagggagacgaTGGGAATGCTCCACCAGACCTCAGTTCCATCTCAGCTGGAGAGGGACCCAGAAAGGGGGCCTATCCACCCCATGCTACACCCAGGGTATCAGGGAGCCCGCGTGGGCACTGCTAGCCACCCTCACCCCCAGCGGGCACCACCCAGGCCCCAGCAGCAGCCTAGCCACCACCACCAGTCTGTCCAGGGGAAGGGTTACTACGGACGGCCTGAGCCTGATCGCACTCCTTCCTCTTCGTCATCATCCTCAGGACAccagagggcaggggagagcgTTATCACCAGCAGAGGGTCTCACCCCAACCCCCTCCCGCAGACGGCGGTCACTAGCTCGCCCCATGACCGCACCATGACTGCCCCCCAACCCCACACGGTCAACTCTGCCCCTCAGCCAGGATCCAATCCCTCTTACTCCAGACTCTGTGCCCAGTCTACATCCCAGCCCCCCCAGGCTACCACCACCTCAGCCCAGGGGTATCTTAACTCTCGACCCCAGCCACCACCACCCTCAGCCCCGCAGTCCATGGAGGAGGCCCTGGATAAACTGGATGCTGAGCTGCAGGGTCATATGCAGGCCGAGGAGAGGAGAATGGACTGGGAGAGAGcgcaggaggagaggaagaggagggactgggagagagagcaggaagtgaggaagaggagggattgggagagagagcaggaggagaggaagaggagggagtgggagagggcggaagaggagaagagaaataaGGAATGGGAAAAAGAgcaggaggaaaggaagaggagggactgggagagagagagggaggaagaggagaggaagaaaaggagagagtgggcgagagaggatgaggagaggaataggaggatggagaggaaggaggagatgagCAGGAGCAGTAAGGGGAGAGAGGAGTCCGCCATCGAGAGTCTGGAGAGACTCCTGTCAGGCAGCACTTCTTCTGCCCCACCTCCTCCTCGCCTGTCCactgtctccacctcctcctcctttgtcctacctccacccccaccaccccccagccagtcctcctcctcacccccctaCCCCTGGCTGAGCCGGGCCGGGGCACCCCCTTGTCCCCCAGGCCATGCACCACCGTCTCCCGCCCCCCTGGAGAGGTCGCAGCCGCCCCCTCTCACCCCCCAGACGGAGTATGCTAGGGAGAAGCAGAagcagaggcagagggagaaaTGGAGTGGGAGTCCCCAGTCATCATCTCACAGTAGTAACGTTACCTCAGGGAACAACGCCCGGTCCTCGTTGGGGCCCTCCTACCCTAACAACCCCTCTGCTGTTACCTCTTACCCCAACCACCCCTTAAATAACACCACCATGCGAGGCACCCCCCGTCCACCCAAAGACACTCCCCAACCCAAGGAGAAAGCTAGTCAGCAGGCCAGAGGAGTAATTGGGCCTACGGGTCCCCTCCACAGCTCCATCAGCATCACCCTCCGAGAGCCCCCCAAACTCTTCCAGGCTTTCCCCAGGGACAGCCTTTCGTCCGCGACCAACCCCTCCAGAACCACCAGCAGCACCTCCAGCACAGGGGGTCTCCTCCACAAGCGCATGCCCAGCGGAGGCCTAGGCAGCCTGGGTAGCAgcgccagcagcagcagcagcagcagcggagACTCGGACAGCGCCCAGTTTGAGGAGGAACCATCGGAGCTCTCTACGTTACTCCCGGACGGTCTGGCCAACATCATGGCCATGCTGGATGAGTCCATCAAGAAAGAGGAGGAATCTTTCTATAGCAGCGACCGAAACGGAGCTAGAGAAAACAACACCTTCTCTGATACCGTGCCACCGGACAAGAGCTACCTGCGCGCCCCGGACCTCATTCCGGCGCCCAAGCAGCAACCGCAGGATGACTTTGTTGGGGCGAACCTCCACGCCAGCCCCCCCGTGCTGAGCCGACAGGGCTCCCTGGCCTCCCCCTGCAGTCGGACCTCCTCCCTcaacgaggaagaggaggagggttgtCCCACCCTGAAACCCGCTCCGGAGCTCCACAAGCCAGCCGTCCCTCTCAACCCCAACCCCCAGTCAGGGACTAACTACAGCCACAGTGACCTGGCTAAACTCTACGGTCTCCCGGAGCCCGCGAAGAGCGAGTGCGACGacgaagatgaggaagaggagtcGGAGACCCCGTCCAGTTCCCCTCCCCCGCCCCAGAGACCCCACCTCCACCAGACGGGGGTGAGCAGCACCTTCAAGTCCCCGGCCGCCCTGGAGAACCAGAAGTACACCTACAGAGGAGGTCCATTTGGCCGCCCGCCCCCCTCCGCTCTGGGGGGACTGAAgtactcctcctccctctctctgggtccCGACATCCAACAGCAGCAGAATAGCACCTCCCCCACCTCCGATTCCACCAATCACCCGGGCTTTACACCGCCCCGAAAGTCCCGCCCACACTCACCCTCCAACTGGGAGGCCAAGAGACAGGTCAATATCAAGATGGAGGCGCCTGATatctggagagatgggagggaggccACGGAGAAGAGGATCCATTCCTCAAAGTCACATTTGAATCCCTCCACACAATCCATCAAGATGGAGCCGAAAGAAGAGATGAAGCTCACTACCATCTCTGAGTCTTCTCTAGCCGAGCTGGGACGGAGCTGTGAGGTCTCCCTGACCCGGCACTCCAATTCCCTCCCCAGCAACAACACCTCAGACAGGACCAAGACTGAGCTGAAACACGAGGACAGGCACCAcaagcctgagagagagagggaacaagacagagagaaggacgGAGAGACTGAGAAGAAGAGGAAACACGGCAACAGCAAGAAACACCAggacaggaaagagaggaagaaaaagcACAGAGAGAAACGAGAGGAGATGTCCTCCTCCCACTCCAGTTCCAAACGGCACAAGGAGGGCAAAGTTCACAAGGAGAAGGAGCACCTGCGGATCCTTGGGAACGCGGACCTCCAGAGCAAGGAGATCCGGGAGAAGGACCGCGACCACGTTCACGCTGACATGGAGAGAGACCGGAAGAGGAGGAAACAGGCTGGTTCCACTAGCGGAGACGAACCCTCAGAATGGGCGTCCCATAGTAGAAGTGAAAAAAGTTCTGGTGTCATGTCCTCTTCTCAGGGCAGTGAGGTTGGATCGACACTGCAGGGTTCGGCTGCTGACTTCATGAAGCTGAAGGCCCTGTCGGACGGGCCGCCCAAGGAGCTGAAGGCCCTGTCGGACGGGCCGCCCAAGGAGCTGAAGATCAGGCTGATCAAGGTGGAGAGCGGAGACCGAGAGACGTTCATCGCCtcggaggtggaggagaaggggaCATCGCTGGAGGAGATCAACATAAACAACACAGCCTCAGAGGTCATACGGGCCTGCAAGGGTGCGAGGGTGAAGGGGAAGTTCAGAGAGTCCTACCTGCTCCCTGCGTTCTCTGTCAAGCCCCTGTTTACTACAGAGCCCATCCCACGGGAGAAACTCAACCCTCCCACACCAAGCATCTATCTGGAGAGTAAGAGAGATGCCTTATCCCCAGTACTACTGCAGTTCTGTACAGACCCCAAGAACCCTGTTACTGTCATCAGAGGACTGGCTGGATCCCTACGACTCAacctgGGTCTGTTCTCCACTAAGTCTCTGGTGGATGCTAACTCTGAGCATGCTGTGGAGGTGAGGACCCAGGTACAGCAGCCTGCTGATGAGAACTGGGACCCCAGCGGCACGGGGCAGACCTGGCCCTGCGAGAGCAGCCGCTCACACACCACCATCGCCAAGTACGCCCAGTACCAGGCCTCCAGCTTCCAGGAGAGCCTCCAGgaggagaaggggagtgatgaagatgatgataaCGAAGATGAGGAAGACAAAGAGAAGAGTAAGGAGACTAGCTCTGAGACGTCTAACAAAGACCCCACAAGCAAAGACGCTACCAGTACCGAGCTGAAACCAGTGGGGAAGATCATCAAGTTTGGCACCAACATTGATCTGTCAGATCCCAAGAGgtGGAAGGCCCAGCTGCAGGAGCTCCAGAAGCTTCCGGCCTTCATGCGTGTGGCGTCCAGCGGCAACATGCTGAGCCACGTAGGTCACACCATCCTGGGCATGAACACTGTCCAGCTCTACATGAAGGTCCCCGGGAGCCGCACGCCTGGCCACCAGGAGAACAACAACTTCTGCTCTGTGAACATCAACATTGGGCCTGGAGACTGCGAGTGGTTCTCTGTGCATGAAAACTACTGGCCGGCCATCAACGACTTCTGTGAAAAGCATGGAGTAGACTACCTGACCGGTTCCTGGTGGCCTGTTCTGGAGGACCTGTACCGATCCAACATCCCCGTGTACCGCTTCATTCAGAGACCAGGAGACCTGGTGTGGATCAACGCAGGGACCGTCCACTGGGTTCAGGCTGTGGGCTGGTGCAACAACATAGCATGGAACGTGGGACCACTCAACTCCTACCAGTACCAGTTGGCCCTGGAGAGGTTTGAGTGGAACGAAGTGAAGAAGGTCAAGTCCATCGTCCCCATGATCCACGTGTCCTGGAACGTGGCCCGCACCGTGAAGGTCACCGACCCAGACACATACAAGATGATCAAacacTGCCTGCTGCAGTCCATCAAGCACATCCAGGTTCTGCGAGACCAGCTGGTGACCGCAGGGAAGAAGATCTCCTACCAGAGCCGGGTGAAGGATGAGCCAGCCTACTACTGCAACGAGTGTGACGTGGAGGTGTTTGACCTGCTGTTTGTGACGTCTGAGAGCGGCAGCAGGAAGACCTACGTGGTCCACTGTGAGGACTGTGCCCGCCAGAGGAACCCCAGCCTCTCCAACAACGTAGTGGTGTTGGAGCAGTACCGCATGGAGGAGCTAATGAGTACCTACGACACATTCAACCTGgCTGCAGCGCCCAGTTCACGGTGATGAAGATCCTCCACGTCTCGCAGCCATAACCAAAACTCCTGCCAGACAGGACTAAACACACCTTTTAAAATGTCTTTTAACCTTTTTTCCTTCATTATTTAAGATATTTTTTACTACTACTGCCGATCAAAATAGCCAATCGAAAACCAGTTTACTACTCATCATCACTGTTTACAAAACCAAACCGCCAATCAAACTCCAGTTTACTTTTGTTGTCTACGGTGCTCAAGACCAGCTTACTGGTTTCTGGAGGACTTGAAAAAACGGAAAGGCAGTTGGTGCTAGCTACCATTGTAAACGATTAACTGAGTTGACGGTTGTTATCAATGGCATGAATTTTTGTTATTTCCGGATTTCTTAAAACAAATTGTCGTCTTGAATACTAAAATGTGTACATgctgtttgtatttttttgtggggTGCTGTTTTCTAAAataatttattttcctttttttaaGACTAGATCAGCCTAGATATATACCACATTGGCCTTGTGACTTGTATTTAGAAGAGAAATAAGATGGAAAATACTAATAATAGAGATGACATTTTTCTAAAAGCATTAAGAATAAGAAGacccattttttggggggggtttggAATGCTTCGAAACATACGGGTTTTAAAGACAATTTTGTTTTTTAGTTCTTGTCTTTCTGACTCTTGTATGTGTTGTAAATGTTgtgtttttacaaatgtataatgTTTATTTCCTTAGGAGTGAGAAAGAAGGCAATTGTCACACCTCTTTAGGGCATCAGGTCTTTGTTTTAATCATTTGTTTCCATTTTTCATCGTGATAATATTTCAGTTGGTGTAATAATTAATTGTGTTGTACCTCTGATTTTgttttgagtttttttttttatatatacagatgtattatttttttttttggagggggggggggggggtattttacaTTGTACAttgttctttttttatttaaaatgtgtCTCGTATTTATTGGATGTCTATGTTCTCCCCTTGTTTTTATTAGGGTTGTACAAGTTTGAAAGTTTTTATGGTGATTCTAAGTCCTCTGTAACAACTTTGTCACAGGAGGACAAAGTTTTCTCTGGTGCTTCTTCTGGTTCTATACATATATAAATGATATTTCTAATGAATATAACTTACACCTTCCCCTGTAGTTGCTAGGATACACAGCCGAGGTAGAAAATTGACTAACGGAATACTGTCTTTGTAATGTGTGaaaaaaacaaaactacattttctgtacattttttacaatttttatcTGAGAAATCGTCATTTTGTTTTTCATCCTTTTTAGGGGCCTTTAGATTAAATGaatgatttttaaaatgttatctGTTGGAGTATTGACAGTTCTCTGATGAACAATTTCTTCTTTTTAATCCTTTTTAAGATGAGAATTCTATTTTTCCTGTTCCAAAATACCTTTTCATTcattttaaactgcactgtttagagaattcacagacacacacacacacacacacacacacacaacaaactgAGCCAGACATGTCTTAAACACTTTGTGAATTTGTGTGACATTACTATGATTATTATTAATAAATAAATGCTTTTGATTAAAGCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU885034 lncRNA downstream 5325 17390176 ~ 17397053 (-) True tmem88b
TU885016 lncRNA downstream 52247 17349505 ~ 17350131 (-) True G776655
TU884998 lncRNA downstream 99914 17301809 ~ 17302464 (-) True G776639
TU884994 lncRNA downstream 105022 17297052 ~ 17297356 (-) True G776635
TU884976 lncRNA downstream 131271 17270823 ~ 17271107 (-) True G776620
TU885045 lncRNA upstream 13304 17561206 ~ 17565394 (-) True G776684
TU885120 lncRNA upstream 24795 17572697 ~ 17574061 (-) True G776753
TU885124 lncRNA upstream 32337 17580239 ~ 17580914 (-) True G776757
TU885136 lncRNA upstream 49278 17597180 ~ 17597806 (-) True G776766
TU885139 lncRNA upstream 51828 17599730 ~ 17600116 (-) True G776768
XM_036987490.1 mRNA downstream 5150 17390090 ~ 17397228 (-) False tmem88b
XM_021614960.2 mRNA downstream 28730 17364983 ~ 17373648 (-) True tm4sf5
XM_021614959.2 mRNA downstream 63247 17330834 ~ 17339131 (-) True LOC110531645
XM_021614958.2 mRNA downstream 63248 17330834 ~ 17339130 (-) False LOC110531645
XM_036987489.1 mRNA downstream 63545 17330834 ~ 17338833 (-) False LOC110531645
XM_036987495.1 mRNA upstream 376168 17924070 ~ 17925788 (-) True LOC118966010
XM_036987496.1 mRNA upstream 458731 18006633 ~ 18129483 (-) True LOC110531650
XM_036987498.1 mRNA upstream 582305 18130207 ~ 18136898 (-) False si:dkey-111f13.5
XM_036987497.1 mRNA upstream 582306 18130208 ~ 18138722 (-) True si:dkey-111f13.5
XR_002474734.2 mRNA upstream 600403 18148305 ~ 18154722 (-) False LOC110531652
TU885001 other downstream 48031 17345478 ~ 17354347 (-) False G776642
TU885002 other downstream 48031 17345478 ~ 17354347 (-) True G776642
TU885013 other downstream 82005 17319615 ~ 17320373 (-) True G776652
TU884794 other downstream 156581 17245434 ~ 17245797 (-) True G776461
TU884682 other downstream 376565 17025380 ~ 17025813 (-) True G776355
TU885132 other upstream 45570 17593472 ~ 17594666 (-) True G776762
TU885184 other upstream 107692 17655594 ~ 17655980 (-) True G776812
TU885186 other upstream 108086 17655988 ~ 17656325 (-) True G776814
TU885192 other upstream 111114 17659016 ~ 17659403 (-) True G776820
TU885195 other upstream 111788 17659690 ~ 17660078 (-) False G776822

Expression Profile