RNA id: XM_021614970.2


Basic Information

Item Value
RNA id XM_021614970.2
length 2217
RNA type mRNA
GC content 0.46
exon number 5
gene id LOC110531655
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 18190851 ~ 18200944 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACTTGCCAAAGCAGTGACGAAAAGCCTGATAGATCGTTGCTCCGGCGAGGaggctactgtagcctatatTTGGCTCTGACTGGTAGACGCAGCTACAGCACTAAGCTCCTCACATTCAGCACCTGGAGAATGAGGACCAGTACACTGGGCATGGTTGGGAATTTTTAATGAACCGATGGCTTTTGCATGTTGAGGAGTGGGTGAACAGATGTTATTATTTCGCGCAATGTGTTTAAACGACACATCATTGCTTTGCGAATGTTCCACAATTCAAGTCGAGgactcTTTACGTTGCTGCTGATGCTGTTGGAGTGGACCAGACCAGGCCTACCGTCTCCCCTGCGGCCGATCTGTGACCTGCGGGTCCTAAAACACTTCATTGAAGAGGCCAGAGATGCCCAAGCAGCCATGCTGACTTGTAAAGAAGGATGTGGTCTTCCAGAGCCCGTCACTGTTCCCCAAACCAAAGTAGACTTCAGCATCTGGGAGAGGAAAAATGCACTGGAGCAAGCTCAGGAGGTACAGTCTGGCCTGTGGCTGTTAAACCAGGCCATTGGCTCGCTACGAGCCTCCGTCACCAACACAGCGTTGCAAAGCCACATAGACAACAGCCTCATAAACATCTTCAGAATAGGAAAGGTGCTGCGCAGCCTCGACATCCAGGAGTGCAACCCTCCAGCAGGAGGagtgtctggaggagaggagacatggcgGGTGTCGTCTGCTTCAGAGCTGCTTCAGGTCCACGTCAACTTCCTGCGAGGCAAGCTGCAGCTCTTGCTGTCCAACGCGCCCATCTGCCACTAGGGCGGCAGCTGATTGGGGCTCTCCGAGGCGGGGCCGAGTTGATTGGAGCTTCCCGAGGCAGGGGGTGGGATCTGACACTATTGACCCTGCTTGTTGCCAGGTAGAACTCTAAAAGATGAGTGGGTGGACCAGATCTTCACAGGAGAGAATTAAGCTATATGGACAGAACAGTTCCTATTGGACTTTAAAAGGAAAAGAGCAGGTAGCACCTTGAACATGGAGATGAGGGAAGTATGTGGTTAAGAAATCACACACCGAAAAGGAATGGGGCCTACAGAATACACAGCTCCACAGCTCTTTAATGGGCACTCTTCAgcactttgtgtgtgtctgtatgtctttTAGCATGAGTGTGATTCTGTGGCCCCTACTGCAATGGAATGTGACTTCTCATCGCCAAGCCTGCGTAATCGACGCAGATTGCACATGACGACACCTTGTTGGAGTTCTACTCAACTGTCATTGACTGCCTATCAAATACCAGAATGAGACCAGAATGAGGGGGCCTAGCCTGTACCACAAACTCTTCAAACACCACCTGCCTCGTTCTTAACACAAAACACTTCTCCAACTGCTGTCTATCAGTGTCCTCATCTGTATTATATATTGCTAATGTAATTACTTATTTATAGAgatttatatttttacttttaaGCTCCAGTTACTGTCATGACTATAGTATTATGAGAGATATACTGTAACTAGGAGCTAGAGACCACAGTTGAGCTCTAACGATTGACCATAATTACTGTATACCACCACTGAACATTGTTGTTAAGATATTTGTACAAGTCAATATCCAACTGTTCACTGTCTGTTACCCTTTGTAGAAGAAATgatctgtgtgtttgtatgtactgtatgtgtgagagagtacCTGTTTGAATGAGTTTTATACAACTCCTTATAACCCTATTGAATGGACTAGAGGGGGGAAGAAACAGAAGCAGAGGTTCAGTCGGTTGAAGGAGGAAAAGATTGCgcggaagagggagagggggcttACGTGAGAACTCCGAAGCTATGCTGTGATTATCAGTGTCTGGTTTATGCACACCAGCACTCAAATAGAGCTTCGACGCAGATAGCATGACTGCCAGGAAAAATATTGATTGGTTCTCATGATGAACATCCTGCATGCCTCTCTCTCGCCTTCATTCAAGCAGCAGCCAATCAAGCGCAATCCTGGGAACCTTTGGAGTCGCTGACGTTGGGGATTCTTCCAATGTCGGGATTAGTGTTTTTCTCCTGTGTTTTGTTTCCCGTATTAAAAGTCTTGCAGTCACAGTGCAGATGTTTGTACATGTTTTTTCCTGTTTGTTTCAGATGTTTTGTCCCTACTATTACACTGCCATTTGGTATTTAAATACAAAATATTATTCTTAGATTAAAAGGATGGATGAAAACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU886561 lncRNA downstream 36171 18149564 ~ 18154680 (-) False LOC110531652
TU886566 lncRNA downstream 37867 18149564 ~ 18152984 (-) True LOC110531652
TU886563 lncRNA downstream 38148 18148319 ~ 18152703 (-) False LOC110531652
TU886564 lncRNA downstream 38148 18149564 ~ 18152703 (-) False LOC110531652
TU886657 lncRNA downstream 71362 18119225 ~ 18119489 (-) True G778132
TU886702 lncRNA upstream 21945 18222580 ~ 18222814 (-) True G778169
TU886704 lncRNA upstream 27243 18227878 ~ 18248665 (-) True G778171
TU886745 lncRNA upstream 123327 18323962 ~ 18324384 (-) False G778207
TU886742 lncRNA upstream 123445 18324080 ~ 18324384 (-) True G778207
TU886748 lncRNA upstream 127135 18327770 ~ 18327989 (-) True G778210
XM_021614966.2 mRNA downstream 2275 18154842 ~ 18188576 (-) True LOC110531653
XM_021614965.2 mRNA downstream 2276 18154842 ~ 18188575 (-) False LOC110531653
XM_021614968.2 mRNA downstream 2276 18154842 ~ 18188575 (-) False LOC110531653
XR_002474734.2 mRNA downstream 36129 18148305 ~ 18154722 (-) False LOC110531652
XM_036987497.1 mRNA downstream 52129 18130208 ~ 18138722 (-) True si:dkey-111f13.5
LOC110532944 mRNA upstream 35587 18236222 ~ 18245095 (-) True LOC110532944
XM_021614978.2 mRNA upstream 83093 18283728 ~ 18298817 (-) True LOC110531659
XM_036987501.1 mRNA upstream 130371 18331006 ~ 18606222 (-) False LOC110531661
XM_036987502.1 mRNA upstream 130371 18331006 ~ 18606222 (-) False LOC110531661
XM_036987503.1 mRNA upstream 130371 18331006 ~ 18606222 (-) False LOC110531661
TU885197 other downstream 530368 17659690 ~ 17660483 (-) False G776822
TU885195 other downstream 530773 17659690 ~ 17660078 (-) False G776822
TU885196 other downstream 530773 17659804 ~ 17660078 (-) True G776822
TU885192 other downstream 531448 17659016 ~ 17659403 (-) True G776820
TU885186 other downstream 534526 17655988 ~ 17656325 (-) True G776814
TU886754 other upstream 154806 18355441 ~ 18358103 (-) True G778216
TU888932 other upstream 1617056 19817691 ~ 19824571 (-) True G780209
TU889016 other upstream 1871361 20071996 ~ 20075452 (-) True LOC110531704
TU889161 other upstream 2101443 20302078 ~ 20303380 (-) False LOC110531717
TU889162 other upstream 2101443 20302078 ~ 20303380 (-) True LOC110531717

Expression Profile