RNA id: XM_021614984.2


Basic Information

Item Value
RNA id XM_021614984.2
length 3819
RNA type mRNA
GC content 0.49
exon number 6
gene id LOC110531665
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 18718365 ~ 18833482 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtcacacacacactgtctctccacacgtgcgcacccacacacacacacacacacacacgcaatgaaACTGAGAGTTGCTTTGATCGGGAGatcaagagacacacacacattctctctttctctcacacacagagggagtAAGGAAGGCATCCAGGCTGGTGCCTTTTGAAGcagcagtgaaagagagaggagagaggacagggggaatcTAAGGCACCGGACCACTGTCACCTACCGACCAGCCCCCCGCCGATGATCCACGGCTACAGCCACTGCACAGTGAAAAGGGGGTTATGCCAGGAGAGCTTGAAAGGAAGGAACGATCCAGCTCTCCGTCTGTCCGTCCACCCGTCATCCTCATTCCTCTTTTTTTTCAGAGCCGATATCTCAGGTCGGACGGTCCCGTTTTgaattctttctttttctcttgtaattttagtttttttctcttttttgatGGAGGGATGTGAAGGATCAGGTGAAGAAAGGAGGAGCTGCATTGTGGATGTCTGAAAGCTTGTGTCATTTATAGTTTTTTGGGTTTGTTCTTATTTCAACGATCACTTTATTTCAACGATCACCTCCTGACTGAATTGAAGCGTGTGTGTGAGCAGCAGGACTGGAGGCTATAAGGACTTTGAGACTTATCTCTGTTTTGATATGATTCGGTCGTCAGGAAAATTCTTTCCTGTCCTGAAGGAGCTGTGTCAAAGTTAGCTGGCGCTGCAGGGAGAGGAAGGGGCCGTGGGGAGGGCCGTGGCCCAGGACAAAGCACCCAACCTGGGACGCACACAGAGGGACACTGGCGTAGTGGCTCTTCTCACCCACTGATAACTGTGTACCTGAAAATGACACCATGAGTTTTATATCTTCCTGCTGCCATTGTGACGGAGGGACAGTGACAACAACGTAAACAACAACAAGTGCAATAGCAGGCAACAGCCTAAAGGAGAACAACAACAGCTAAACCACCAGTGACTGGAACAACACATTGCATCGAACCAAACCTCAACTAGTCAACATCCCACAACTTTGGGTGAGCCTTTGACAAGGACTCCACCACTCTCACTGCCGTGGTGGtctcctccctccattcaccAGCAAGAATCCCCTAGTGACCCCCACTCTGCTACTATATTCCTCCAGATATTGTTGACATAACATATTGACATTTCTATGTCAATCTAGGAAAGTTTTCTCAAGGATTCTGGGTAATCTCCTCCGGCGGTGCGCCGTCGCCCTGGGTGAAAGGGCAGGGGGGCGGCCCACGGTTCCCCCCGACCACAACCGGGTGAAAAACAGGAGCGGGCGGCAATATGGCGGCTCTCGCCAGCTCATTGATCCGCCAGCGGCGGGAGGTGAAGGACCCCCAGGCCAACCGGCAGGTGGCCAACAAGAGGAAGCCGTGCCCCAAGGCCAACAAGTCCCTGTGCCAGAAACAAATATTATTACTCATATCAAAAGTCCGACTATGTGGCAATCGAGGGCGAAAGTTAGAAAAAAAACCGGAGCCCCAACTGAAAGGTATCGTCACAAGACTCTACAACCGGCATGGCTTCTACCTCCAGATGCTTCCGGATGGCACCATGGACGGCACAAAGGACGAAAGCAGCTCCTTctTGCAGTTCAACTTGATTCCTGTGGGACTGAGGATAGTAGCCATCCAGAGCACTAAGACAGGGCTCTACATTGGGATGAACAGCGATGGATACCTCTACACCTCAGAATACTTCACCCCAGAGTGCAAGTTCAAAGAGAGTGTGTTTGAGAACTACTACGTGACGTACTCGTCAATCCTGTACCGGCAGACCCAGTCGGGCAGGGCCTGGTACATCGGCATCAACCGGGACGGACAGGTCATGAAGGGCAACAGGGTCAAGAAGACCAAAGGGGCGGCCCACTTCCTGCCCAAACTCATAGAAGTGGCAATGTACAGGGAGCCTTCGCTGCATGAAGTGGTGGTGGTCGCCGAGCTGAGTCCGCCCAGAAAAACGGCCAAGACCTCCGATTCGCCCGTGCTGCAGAACGGCAAGAAAGACCCGCCCTCCAAAACCAAAACTTCCTAGCGCATGGAGAAGACAGGGGGCAATGGGCACTGACTGGCACTGGCACTGACTGGCGAACAAAGTCTTCCTGTTTTTATTACAAAGGGGGGTCACCGTCAAATGTTTCCCCCTTGCCCCACCGAGCAGCGCGTAGAGGGGGCCGTATTGTTCTATATTCCCACAGGTTTCATCCTAATGTAAGGTTGACCAAGGATGTGAAATTTCACTCTATTccgtttatagtgcactacttctgaccaaagCTTGcacaggactctggtcaaaagtagtgcactataaagggaatttgGGTGCCACATGGGACGTGTCCCCAAACACCCTGTTGTTCTCTTCACATCTGTTACCAGGTGTTCTCTGTCCGTCAGCACCTTTGTGACCATAGCGATCCCCTCCATACTTAAGCAATGATGTGGAGgttctcttttctttttttctttttctcgTTCACCTTTGGTGAAATTTGATTAGTTTGTGACACGGAGTCAATTTTCCACTCGGCAGCACAAGAGAAACTTCCTCGTTCTTCTCTAGGGCTGTTAACAGCAGCTCTCTAATCAAAATCTCCCATACCtctttaaagagagagaggaacctccccactgcactgcattgaactacacacatacacacacacacacacacacccttctgagagagagtggtgattGTGTGCGGGTCAGGGCTTAAGGAATGGTAATGACACCATCAGTGAGATGGTGTTGGTCTCTGAGAATCTGTTTGCAATACACCCTCCTATCACTACAACACAATGTATCATTTCTCTAGCTCATGCCTTCAGTCAGGGAGATACATACTGTTGGGCCCACAGCAGGtcagtggcaccttaattggggtggacgggctcgtggtaatggctggagcggaatgagtggaatggtagcaaatgtgttttcatgtgtttgatgccattccatttgctccgttctgggcattattatgagccatcctcccctcagcagcctcctgtgtcgTAGGCCTATTGTggttttgtttgagtgtttttgtaGTTGTGTATGTTATTGCAGGACAGTTGTGGTTCTTTCCTGAGGGCTACAGCCTCTTTATGGAATTATCAGgccaaacagactggcacccaggctaataACCTCCTGGTTCCATGTTTATTTCTGATGTTGATCTCAACTTCAGATGTAATAACCAACTAGTATGCACTGAACCTCATCAACACATGATCCAGTATCCTGAGCAGATCGTAGTTATTACGAGCCTCCTTTACTGCACGCTACACCATCATGTCTGGTCATTGCCCACAGCAACGTCATTGTTGTACAGTATGAaatctgttgttgttttgttgacgttgacaGCGCCAGTTACAGGTTGCTAATTCTCGATGGCTGCATCCGAAAAGGTACCgaccagagctctggtcaaaggtcACGCAGTACAGGGAATACGGTGCCTGTCGTTGACATGCGTCTACAAGACTatgatgtttttattttattttaccgtGATGTGGTTACAGGAGGGATTTGAGTTCCCATCCCAAATGGAATGttaggtcacactttatttggagaATCCGGATTTATGGTCATACtgtcaacaaactatctgttgatgaGCAACTACTTGGTAAGGTTACAATTTGGGTTAGAATAAGGGTACGGTTAGGGTTtaagttaagtttagggttaggataagggtaagggtaaggtttagggtttaagttaagtttagggttaggataagggtaagggtaaggttt

Function

GO:

id name namespace
GO:0008083 growth factor activity molecular_function

KEGG:

id description
K22413 FGF11_12_13, FHF3_1_2; fibroblast growth factor 11/12/13

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU885901 lncRNA upstream 84645 18633270 ~ 18633720 (+) True G777474
TU885898 lncRNA upstream 87003 18631154 ~ 18631362 (+) True G777471
TU885896 lncRNA upstream 90088 18628074 ~ 18628277 (+) True G777469
TU885891 lncRNA upstream 97743 18620385 ~ 18620622 (+) True G777464
TU885882 lncRNA upstream 108762 18609202 ~ 18609603 (+) True G777455
TU886065 lncRNA downstream 12349 18845831 ~ 18846270 (+) True LOC118966177
TU886087 lncRNA downstream 41611 18875093 ~ 18875295 (+) True G777643
TU886102 lncRNA downstream 75135 18908617 ~ 18911505 (+) True G777658
TU886139 lncRNA downstream 127952 18961434 ~ 18963380 (+) True LOC110531667
TU886209 lncRNA downstream 217330 19050812 ~ 19051046 (+) True G777749
XM_021614983.2 mRNA upstream 45047 18656177 ~ 18673318 (+) False LOC110531664
XM_021614981.2 mRNA upstream 69690 18640655 ~ 18648675 (+) True LOC110531663
XM_021614979.2 mRNA upstream 397606 18301368 ~ 18320759 (+) False LOC110531660
XM_036987500.1 mRNA upstream 397606 18303134 ~ 18320759 (+) True LOC110531660
XM_021614977.2 mRNA upstream 461962 18250932 ~ 18256403 (+) True LOC110531658
XR_005053441.1 mRNA downstream 11794 18845276 ~ 18846593 (+) False LOC118966177
XM_036987505.1 mRNA downstream 78268 18911750 ~ 18928236 (+) False chrnb1l
XM_036987506.1 mRNA downstream 78268 18911750 ~ 18928236 (+) True chrnb1l
XM_021614985.2 mRNA downstream 105113 18938595 ~ 18950268 (+) True LOC110531666
XM_021614986.2 mRNA downstream 127855 18961337 ~ 18963378 (+) False LOC110531667
TU885868 other upstream 60791 18656331 ~ 18657574 (+) True LOC110531664
TU885818 other upstream 218347 18499614 ~ 18500018 (+) True G777396
TU885567 other upstream 609883 18108019 ~ 18108482 (+) True G777165
TU885507 other upstream 712697 18003267 ~ 18005668 (+) True G777113
TU885503 other upstream 716183 18001889 ~ 18002182 (+) True G777111
TU887666 other downstream 984206 19817688 ~ 19824606 (+) False LOC110531694
TU887667 other downstream 984206 19817688 ~ 19824606 (+) True LOC110531694
TU887801 other downstream 1042786 19876268 ~ 19892447 (+) True LOC110531697
TU887900 other downstream 1176034 20009516 ~ 20022036 (+) False LOC110531703
TU887902 other downstream 1176034 20009516 ~ 20023468 (+) False LOC110531703

Expression Profile