RNA id: XM_021614985.2


Basic Information

Item Value
RNA id XM_021614985.2
length 1607
RNA type mRNA
GC content 0.47
exon number 4
gene id LOC110531666
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 18938595 ~ 18950268 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGGAGGAGGGGATGCGAGAAGAGACCTCTCACGCATCACCGGGCACGgtgactggacacacacaccccctcgcAGGCCCTCATGCAGAATTTAAATCCCCCTTCCCGCAAGCTCAGCACTACTATTCAAGGTGCGGCTCAAGCTATAACAGGTGGAAAGGAGATCAAGAACCACAACAAGATTGTGTTTACTGACGCTATCCTGACGCGTTTAATGAAGATAGGTAGATCCACCTTGCATATATAGACTGCATTAAGATAACCGTTGTGTGCCTTTGGACACGCACAAAAGGATTCATAGTTTTTTCATCAACAGAAACGTATTTATTTAGACATTTAGACAAAAATAATTGACAAAATAATTTTATTTTTAAAGATGGCAAATTCGGGAATTCAACTTTTAGGATTCGCCCTGTCACTCGTCGGTGTCATTGCACTTATCGTGGGGACCATTCTTCCACAGTGGAAGATGTCTGCACACGTAGGAGACAACATCATAACGGCGGTTGCCATGTACCAAGGACTATGGATGTCATGCGCTTTTCAGAGCACAGGGCAGCTCCAATGTAAAATCTACGACTCGATCCTGCAGCTAGACGGCACTCTCCAGGCCACTCGTGCCCTGATGATTGTTGGCATCATCGTATCCATCGCTGGGCTGGGCGTGGCCACCATGGGCATGAAGTGTACCACCTGCGGaggaaacaacaaaatgtggaagtctCGCACCGCCATGACTGGAGGTGTCATTCTACtggttggagCTCTGTGTGCATTAGTGGCCTGCTCGTGGTTCGCTCATAATCTCATCCGGGCCTTCTATAACCCGTATTCTCCTGTCAACACCAAGTTTGAGTTTGGGGCAGCCATCTTCATCGCCTGGGGGGGTTCTTTCCTGGACCTGCTGGGGGGAGCTATGCTGGCATCTTCCTGCCCCAGGAGTAAAAAGCCGGTGCCCAAATACCCTGTCATGAGTGGCGTGAGTGCTCTCTCACCATCCAGCAGCACCAAGGAGTACGTGTGAGCTAAATTATGCTGCCAGATTATAATGAGATTCACAGAAATTGTTGTGAGGTTTACAGATATGcccacaccccaccccaccccagcaGGACCGTTGTGATGTCTCTCACCCGCTCCCAAAATTCCACAATTGTTTATGAGTGGGCCTCACAAATACACTATAATTGGTTATTGGATCCCCCTTATATTATGTTTTAGGGTGCATGTTCTCgtattacacaaacacacacacacttctcttaTTACAGCCAAGATGCAGCATCATGGCAAACACTCACCTCCCTGTAAGAAACACTGTCTACTTAAATGAACATTTCCATTGTAATTGAAGGTAGTCAATTAAACTTGTTGTGGTGCTAAGGTCCTACTCTTGGCATACTCATGGGACAGCTATGTATGTAAAATAGGAAACGGGACTAGCGCACCACCAATACTTTTACAATGGAGTTTTTTGTAGACATGACCATCTCCAATTGTGTTCAATGTTCAATCCAAGTGGAACTTCACACTAGTTGTGAGTGACTGTATACGCTATGGTGAATCACCGGACAATTCACTGTTGCACtccaaaagggggggggggg

Function

GO: NA

KEGG:

id description
K06087 CLDN; claudin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU886102 lncRNA upstream 27090 18908617 ~ 18911505 (+) True G777658
TU886087 lncRNA upstream 63300 18875093 ~ 18875295 (+) True G777643
TU886065 lncRNA upstream 92325 18845831 ~ 18846270 (+) True LOC118966177
TU886047 lncRNA upstream 124640 18813725 ~ 18813955 (+) True G777603
TU886045 lncRNA upstream 127358 18810896 ~ 18811237 (+) True G777601
TU886139 lncRNA downstream 11166 18961434 ~ 18963380 (+) True LOC110531667
TU886209 lncRNA downstream 100544 19050812 ~ 19051046 (+) True G777749
TU886212 lncRNA downstream 105766 19056034 ~ 19056422 (+) True G777752
TU886214 lncRNA downstream 112966 19063234 ~ 19063457 (+) True G777754
TU886215 lncRNA downstream 113834 19064102 ~ 19064330 (+) True G777755
XM_036987505.1 mRNA upstream 10359 18911750 ~ 18928236 (+) False chrnb1l
XM_036987506.1 mRNA upstream 10359 18911750 ~ 18928236 (+) True chrnb1l
XR_005053441.1 mRNA upstream 92002 18845276 ~ 18846593 (+) False LOC118966177
XM_021614984.2 mRNA upstream 105113 18718365 ~ 18833482 (+) True LOC110531665
XM_021614983.2 mRNA upstream 265277 18656177 ~ 18673318 (+) False LOC110531664
XM_021614986.2 mRNA downstream 11069 18961337 ~ 18963378 (+) False LOC110531667
XM_021614988.2 mRNA downstream 26726 18976994 ~ 18982679 (+) False LOC110531669
XM_021614989.2 mRNA downstream 26789 18977057 ~ 18982679 (+) True LOC110531669
XM_021614987.2 mRNA downstream 33015 18983283 ~ 18987728 (+) True LOC110531668
XM_036987512.1 mRNA downstream 44797 18995065 ~ 19006294 (+) False ugt5g1
TU885868 other upstream 281021 18656331 ~ 18657574 (+) True LOC110531664
TU885818 other upstream 438577 18499614 ~ 18500018 (+) True G777396
TU885567 other upstream 830113 18108019 ~ 18108482 (+) True G777165
TU885507 other upstream 932927 18003267 ~ 18005668 (+) True G777113
TU885503 other upstream 936413 18001889 ~ 18002182 (+) True G777111
TU887666 other downstream 867420 19817688 ~ 19824606 (+) False LOC110531694
TU887667 other downstream 867420 19817688 ~ 19824606 (+) True LOC110531694
TU887801 other downstream 926000 19876268 ~ 19892447 (+) True LOC110531697
TU887900 other downstream 1059248 20009516 ~ 20022036 (+) False LOC110531703
TU887902 other downstream 1059248 20009516 ~ 20023468 (+) False LOC110531703

Expression Profile