RNA id: XM_036987509.1


Basic Information

Item Value
RNA id XM_036987509.1
length 5175
RNA type mRNA
GC content 0.52
exon number 17
gene id LOC110531672
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 19017546 ~ 19047473 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACTGATGTACTCTGTCGGCGTGCGTTTGAGGGACGGGTGGTTGGAGTATTAGGAGTTGTCGGGCGATAGTGCACCACAAACGCTTAGTTCGGGAGGATACTTTtttttgctaaaatatacttaaaaaacaacaaaaggaaTCCCAGCGATGACTTAATACAGTAACTTCTCCGACTGCTGCATGTATACGCCTGTTTTGGCATCCCGCAAGTGACGGAATCAAGGTGTCGGTGATAGCTAGCTGCTTGCTAACATCTTCCTTTCACATAGCATCATTAGCTTTGAAGCACATTGCAACTAGACCGCCGCGGGCCCCCTCAACGCAGGACAGCACCTTGCTAGTGCCGTTGCACGCTAGCTAACAAAGGTATCGTCGATagtttgctaacgttagctaggtagtGAGCTAACGTGAAGTTGACCGCTGGagacgctaacgttagctattcgTTGATCCCATAATCAACACCCAACTCCCCGATcccttcacccctctccctccacctcccgaAACACTGGAAATCCACAAGCGGCCGGAGAGCGGCGACGGGCCAGCGGCAGAAAAGCTGGGGGTGGTACCGGAACCGCACGGAGTCGTAGCGGCTCAATCAGAGAAGCACAGTCTTGCGGACCTACCGACGACTATGGACGGGCTGGCGGTGGAGGTTCGCGGTTCGAACGGGGCCTTCTACAAGGGGTTCATCAAAGATGTCCATGAAGACTCACTCACAATAGTATTTGAAAACAACTGGCAACCAGAGAGACAGCTGCCCTTCAGTGACGTGCGGCTGCCGCCTCCAGCCGACTACCACAAGGACATCGGCGAGGGAGAGGAGGTTGAGGTGTACTCCAGGGCCAACGAGCAGGAGCCATGTGGCTGGTGGCTGGCCCGGGTGAGAATGATGAAGGGAGAGTTCTACGTCATCGAGTACGCAGCCTGCGACGCCACATACAACGAGATCGTCACGCACGAACGCATCCGTCCCGTCAACCCCAACAGCCCCTCCTCCCGAAACTCCTTCCACAAGGTCCCCATCGCTGTCCCAGAAGACCTCCGGGACATCTGTGCAAACGACAACATCCACAAAGACTTCAGGAAAGCCATCGGCGCCAACTGTATCTTCTACAGTGCAGCCTCACACGAGCTCACCGTGCTGtcaACGAACGAGACGTCAGTAAAGCGTGCTGCTCTCCTGAGCGACATGCACTTCCGCAGCATCCGTACCAAGCTCATGCTCATGTCCCGCAACGAAGAAGCCACTAAACACCTTGAGACCAGTAAGCAGCTGGCGTCAGCATACCAGGAGGAGGTGAAGGTAAGGGAAGACCTGATGGGTCTGGCCATTGGCTCCCACGGTGCCAACATCCAGCAGGCCAGGAAGGTGCCCGGCGTCACCGCCATCGAACTGGAGGAGGAGAGCTGCACCTTCAGGATCTACGGAGAGACTCCAGAAGCAGTGAAACTGGCCAGGGTTTTCCTGGAGTTCAAAGAAGACTACTTCCAGGTGCCCAGGAACCTCGTAGgcaaaGTGATCGGCAAGAACGGAAAAGTCATTCAGGAGATCGTAGACAAGTCGGGTGTGGTTCGGGTCCGGATCGAGGGGGACAACGACAAAAAGCTTCCCCGGGAGGAGGTAGGCAGGCAGGGGGCTGGCAGAGAAGACACTGCCCCTAAACAAGAGggcATGGTCCCCTTCGTCTTTGTGGGAACTAAGGAGAACATCAGCAATGCCCAGGCCCTGCTGGAGTACCATGTGGCCTACCTACAGGAAGTGGAGCAGCTGCGTCTGGAGCGGCTGCAGATTGACGAGCAGCTCCGTCAGATCGGGGTGGGTTATCGTGCTCCCCCTAGTCGGGTCGGGGGCACTGGCCCCGGGGACAGGGAGAAGGGCTACCTGACGGACGAGAGCAGCAACTCCACCAACCTCCACACCTCCCGCATCTACGGAGGCCGCGGCCGAGGGCGCAGGCCCTCCAACAGCCAGTACTCTGGATATGGTACCAACTCTGAGCAGTCCAACGCCTCTGAGCCTGAGGACCTCAATGAGCGTGACCAGCGTCCACGGGGCGTGGGTGGAGATGAGCGAGGCTCCCGCCGGGGTGGCAGGGGCCGTGGATCCAACACCGGACGGGGCCGCGGAGGACCCGCCTCACGACCTTCCAACTCAATCAGCTCCGTGCTGAAGGACCCGGACAGCAACCCGTTCTCCCTGCTGGAGGGTGAGAGTGAGCAGGGTGACACAGATGCcagtgagggggtgggagaggtAGACCTCAGGAGACGCTCTCGCCGTCGCCGCAATGACCAGGAGCCCAGTGTGATGGACGCCGCTGCCACAGAGTCAGACAGCCAGGCCGGACCCAACGAGAATGGACTGGATGAGCAGGGCAGACCCCAGCGCCGCAACAGGAGCCGCCGTCGCCGTAACCGTGGCAATCACCCAGAGGGAGGATCCGCCAGCTGTGACAGACTGCCAGTTGAAGTAACCGTGGCAGACTACATCTCCCGCGCCGAGTCCCAGAGCCGACAGACCCTTCCCCAGGAAACACTTGCTGCTCCCGAGCTCAAGGAGAACGGGAGCAGTGCCAAGAGGGACGAGCACATGGCCCCCTCCAAGCGTTCCCCTAGCAACGGCATGGCCACACCCAGCGAGACCCTTGTCAACGGCGTCTCGTAGAGGACTAGGCCTCGCCCCCTAAAAACCCACGTCTAGAGCAAGACTTCATGGCAAACTCTGTCCCTGCTTGCATTTACTTAAACCTTAAAACAGATGAGTGAAAAACGACAAAATACCAGATTCATACTactatgagagagaggggggagagaaagtacATAAAAACACACGTAATGGTGTATGTTATCCTATCTATCAGTACTTAGTGcttatttaaataaaaaacacCTAGCTTGCCAGAAAATAGCTGGTGGATACGACTTGATTTTTAAAGAAATAACAAACACAGGATGGgactttattttttgttttttttgcaagttttttgttttattttgatgtTATCACTGGTTTGGACTTTTGGCCGCTCTCCCATTCAAACAGACATGTCTTTTACCAGTCTTAAGGTCCGGAGGATAGATGATGCTAGCTGGAGGATAGGAGGGATGGGCGGACGAGTCCAAGAGGTGAAGAACAAGCGTCAGGCGTGTTACGTTACGTACCCTGGCCTAAACGTCAGTTGGTGATGATGGACAGAAAGTCAAACAGATGTGATTATTGATAGACATTGTGCcttgaatttgaaaaaaaaaaaaaaaaaaaagaactagtttgtttttgtttcacaGGAAAGAGGTTTTTCTTTGAGAAGAGAACAGACCAGTACCGAGGGAAGGGGGAGTTAAATGATTGCAGAGGTATTAACTGGTAATACAGAAAAGAACGAGGGAACGAATGACTGGCCAGAGAGTCTGGTGCCAAACAAAACTCAAGGCGCTTGTCCTCCCTAAGAGTGGACTGGACAGTgtttgggttgtgtgtgtgtatgtatggatGTATGTACGTGTGCACAGTTGAGAACTGGCAACCCTGGGTCAGTGGTGAGTTCACAATGGCAGGTGAGGCCACTATTGGCTGGGAGGATAGGAAGGGGTGTTGTGTCACTTCCCCTCTCCCTTGCTTGACGCTCGTGTCCGGGGCTGGTCCTACACACAGCCTTTCAGACTGACAGACAAGGAAATAGATTGAGTACTTGATAAGTCGATGGATTTAGACTGTAAACAAAACTTCACAGTGCCTCTTTCTCCGGGCCTACTGGCTGTGTGGAATAGGGAGGTAGGGTAACATGGCGCTGTAGCTCCCAGCCACACTAACAAATGCCTGGGTGAACTGCAGCATGGGAGACCCAACACACACGCCATGATGAccaagagatggagggaggtagactGTAGAAGGCTGGCCACGTTGTTTCACCCTTCTAGAGGGTCTGGGTGACGAGCGCAGCTTCAAAAGAGATGAGAGCTATACACACGCACTGTTACACACAGATGCACAAACTGCAACACGACACTGTTGCAATTCAGTCACGGGCGGTGGGGTGCAGCCAGTGTGGTCGCCCCACGTTATGTTCGGAGGAGACGTGAGTGTTTTTGAGATTAACTAACTATAAGCAAGGTGGTTGTCCTGTTCTTAAAAGGCGAGGGGCGTGAGGGAGGAGACTCAAACTCTTGTTGGCTTGTGGGCTCATGTTGTTACTGTCGTCTTGGTTACCTCTCAACTACTTTTGTTCTTTCCACATCATAGAAAATGTGAAATAAAATGGAAGTGAAATCAACTGTCTGAGATGAACTGATTGATTTCTTCTGTCTGAGTTTGCGCTCTATTTTTCTAAATCGATAAACAAGCGAATTTGCATGATCATTTAGCAGTAGCTTTGCATGAGGGAGAGGGTCACGTTTCAGCTTCACCATTACGTCATCCACTACTAGAACTGCTGCTAATGTCCACATCGAATGTGTTTAAGAATCCATACCTTGGAGCAGGGCTCCAATgttgttcctggagaactaccatcccgTAGGCAGGCTTTTGCTCCTTCCAGACTGTAGCTCTCCAgaaccagggttggagagccctgctttaGACACTTTAGTACTGTAGTGGCTTCTCTGACTACCTTTCCACCACTCATTGACCCACAAGATGGCTGCCTTTTTACTGGTATGACTAAGAATAGAATTAGCCCCATTTCTTACTCTTAAGTATTACAATATGTTTTTAACACAAACCTGGCACATCAGTGTTCTCACAGCCACAAGTATTGAGTGGGTTAAATTTGGATGAGGTGTGTTTACTGGATTAAAATCAACTGGATTGTGTTGCCCCCTTTTGGTTAAACTGTCTTTCTGTGTCATGGTATGAGAGCAGAGCACTGATTTTCAAATAATGAATTCAGTTGTGCATGCCTGCATGTGGGATTAAGAGACCGATTGAGCACTTAATGTATTGTTTGTGAAACGTATACCTCACTTGTCTATACTGTATCTCCCTCTTTTGGCTCCCTGTATCCCTATGTCTTTCTGGTTGGGGAGAATGTTGACGTTTGTGTGTATGTTAGTAGTACTGTTTAGGTACTGTCAACTCTTCACTCTGTGTCAGGTTGTCTGGTCTTCTCACTCATGTTCTGATGGCAATAAAGGACTTTTCATTGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU887194 lncRNA downstream 36486 18970964 ~ 18981060 (-) True G778626
TU887142 lncRNA downstream 100937 18916300 ~ 18916609 (-) True G778584
TU887132 lncRNA downstream 121988 18895261 ~ 18895558 (-) True G778575
TU887131 lncRNA downstream 122911 18894336 ~ 18894635 (-) True G778574
TU887011 lncRNA downstream 280827 18715780 ~ 18736719 (-) True G778455
TU887235 lncRNA upstream 10648 19058120 ~ 19058420 (-) True G778666
TU887242 lncRNA upstream 19219 19066691 ~ 19070111 (-) True LOC118966012
TU887247 lncRNA upstream 28646 19076118 ~ 19076772 (-) True G778678
TU887248 lncRNA upstream 29593 19077065 ~ 19077316 (-) True G778679
TU887251 lncRNA upstream 31633 19079105 ~ 19079319 (-) True G778682
XM_021614993.2 mRNA downstream 142 19010092 ~ 19017404 (-) False LOC110531673
XM_021614994.2 mRNA downstream 142 19010092 ~ 19017404 (-) True LOC110531673
LOC110532946 mRNA downstream 27902 18987822 ~ 18989644 (-) True LOC110532946
XM_036987503.1 mRNA downstream 411324 18331006 ~ 18606222 (-) False LOC110531661
XR_005053199.1 mRNA upstream 19219 19066691 ~ 19070212 (-) False LOC118966012
XM_036989267.1 mRNA upstream 36560 19084032 ~ 19085999 (-) True tifa
NM_001124299.1 mRNA upstream 72028 19119500 ~ 19124018 (-) True nitr2
LOC110532949 mRNA upstream 100630 19148102 ~ 19156589 (-) True LOC110532949
NM_001124300.1 mRNA upstream 125163 19172635 ~ 19174378 (-) True nitr3
TU886754 other downstream 659443 18355441 ~ 18358103 (-) True G778216
TU885197 other downstream 1357063 17659690 ~ 17660483 (-) False G776822
TU885195 other downstream 1357468 17659690 ~ 17660078 (-) False G776822
TU885196 other downstream 1357468 17659804 ~ 17660078 (-) True G776822
TU885192 other downstream 1358143 17659016 ~ 17659403 (-) True G776820
TU888932 other upstream 770219 19817691 ~ 19824571 (-) True G780209
TU889016 other upstream 1024524 20071996 ~ 20075452 (-) True LOC110531704
TU889161 other upstream 1254606 20302078 ~ 20303380 (-) False LOC110531717
TU889162 other upstream 1254606 20302078 ~ 20303380 (-) True LOC110531717
TU889401 other upstream 1883488 20930960 ~ 20933147 (-) True LOC110531730

Expression Profile