RNA id: XR_005053199.1


Basic Information

Item Value
RNA id XR_005053199.1
length 1049
RNA type mRNA
GC content 0.43
exon number 3
gene id LOC118966012
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 19066691 ~ 19070212 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cacaGGATCAAGGCAAGCAGCAGTCACTGCCACTGGGGGTGCTGTTTCGGGTGCTGCTGACGTAACGATCGTCCTCTTGTCGTTGTTTGCTGTCCAGTTCCCTCCAACACTCGTTATAGTAGGTACACAACTTGGCGTGTCAGTAGACAATTCGCTGTACCCGTTCAAGTAGACAAAGCAAGTCAATCGTTGGACACAGTTTTACTGGAGCCTGACCTTTTGAGACGCTGCGGGCAAAACAACTATTCTTACCACCGAGATAAAGACAATTTCAAGTTGGATATTCACGCTTTCAAACCTCAATCCACTTGAGCCACAGACACCAAAATGTCCATGGACTGTCAGATGAGCGGTAACGTGAATGATCCCGGAGCAGCTGGCGGGAGCCctggggagagttctcttttctttgtgaagggcagggcacCCTGGAATGGGTTTACCTTGAGAGAGGGGCCCTGGAAATCATTGCGGTTTCAGCGTCGTCCGACCAAGTTAACCAGAAAGTGAAAGAAAACATCCCTTCAATTGCATCAGCCATCATAAGATCCATCATGGAGGTGTCTCACACCATGGAAACAGAGGAGCTGATGACATGCCTCCAGATCCAGCTCTACACTGCATATTGCCCCTGGACACAAGTACCAGGCTGAGGACCCAGTGAGGCAATTGTGCATTGAGTTTCTTTCATAGATTACTTTTACTACAATAACAGCCATATTGTATTATTTTCTCTTTAATTAGAAGCAGTTTTCTTAAAATGCTTAACATTCTGAAAGCTTAAATCAAAATATTGACTGTGGCAACAAGCTATCAGTACCTCAAATGTTTTTATATTCTACCTTATAACCTACTCCTCAAGTATTATCCAGACTTACGTTATTTTATAAAATGTGACACTAAAGAATGTGAATATTACCCTTTTTCATGATACCCAAATAAGAGCAAGAATCAGAATTCAATGAAGGACGATGTTAAGGTGGGGGAAGGATATTGTTATGTCACCGTTTTGTAAATGTTGATTATAATAATTAAACCGTTTGATTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU887235 lncRNA downstream 8271 19058120 ~ 19058420 (-) True G778666
TU887194 lncRNA downstream 85631 18970964 ~ 18981060 (-) True G778626
TU887142 lncRNA downstream 150082 18916300 ~ 18916609 (-) True G778584
TU887132 lncRNA downstream 171133 18895261 ~ 18895558 (-) True G778575
TU887131 lncRNA downstream 172056 18894336 ~ 18894635 (-) True G778574
TU887247 lncRNA upstream 5906 19076118 ~ 19076772 (-) True G778678
TU887248 lncRNA upstream 6853 19077065 ~ 19077316 (-) True G778679
TU887251 lncRNA upstream 8893 19079105 ~ 19079319 (-) True G778682
TU887263 lncRNA upstream 38666 19108878 ~ 19109250 (-) True G778694
TU887265 lncRNA upstream 41488 19111700 ~ 19111989 (-) True G778696
XM_036987507.1 mRNA downstream 19218 19017546 ~ 19047473 (-) False LOC110531672
XM_036987510.1 mRNA downstream 19218 19017546 ~ 19047473 (-) False LOC110531672
XM_036987511.1 mRNA downstream 19218 19017546 ~ 19047473 (-) True LOC110531672
XM_036987509.1 mRNA downstream 19219 19017546 ~ 19047472 (-) False LOC110531672
XM_036987508.1 mRNA downstream 30732 19017546 ~ 19035959 (-) False LOC110531672
XM_036989267.1 mRNA upstream 13820 19084032 ~ 19085999 (-) True tifa
NM_001124299.1 mRNA upstream 49288 19119500 ~ 19124018 (-) True nitr2
LOC110532949 mRNA upstream 77890 19148102 ~ 19156589 (-) True LOC110532949
NM_001124300.1 mRNA upstream 102423 19172635 ~ 19174378 (-) True nitr3
XM_036987515.1 mRNA upstream 107833 19178045 ~ 19179798 (-) True LOC110512425
TU886754 other downstream 708588 18355441 ~ 18358103 (-) True G778216
TU885197 other downstream 1406208 17659690 ~ 17660483 (-) False G776822
TU885195 other downstream 1406613 17659690 ~ 17660078 (-) False G776822
TU885196 other downstream 1406613 17659804 ~ 17660078 (-) True G776822
TU885192 other downstream 1407288 17659016 ~ 17659403 (-) True G776820
TU888932 other upstream 747479 19817691 ~ 19824571 (-) True G780209
TU889016 other upstream 1001784 20071996 ~ 20075452 (-) True LOC110531704
TU889161 other upstream 1231866 20302078 ~ 20303380 (-) False LOC110531717
TU889162 other upstream 1231866 20302078 ~ 20303380 (-) True LOC110531717
TU889401 other upstream 1860748 20930960 ~ 20933147 (-) True LOC110531730

Expression Profile