RNA id: XR_002474737.2


Basic Information

Item Value
RNA id XR_002474737.2
length 1995
RNA type mRNA
GC content 0.36
exon number 2
gene id LOC110531675
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 19093068 ~ 19107907 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGTGGATAACGTTGTTTTTTTTGTCATCAGAGGACAAACTGAATTGTATAAtaattgtttacattttttgATCTCTTAACATCTTATCGCAGATTCTTATCACAATCAGTGGTCCGATGGCAGATGATCAGTTGCTTCTCATTACATTTTAATCATTGAATTGTGATCATGTGAAGGGGGTTATGTGCCTGATGATAAATTAAGAATCGTCCTCTACCAATGTGAAATAACGTTATCGCTTATCTCCCCTCGACTTCAAGTGCTCAATCACAATTGAACTATCTAAATCAACCCCTTCACTGCCCATCAATTTATTTAGGTTTCATGGGTTGGATTGatggggctttattgtcatgtcCCCAGTTCTCACCATATTACACTTGGCATGACTGTTCTGAGCACCCTTGCTCTGGAAGACTCTTTGGAGAGATGTTCTTGGCACAGCCTGCAGTGGCCTAACCAGGTAAGATGGGAATCGGGATCAGTTGTGGGTTGTATGAAACTAAGGGTTAAAGATGTGAGGAATTTAGGTACACAGGAGTAGAGGTATTTTCTGAATTTAGTACAGGGTAAAGGCAAACAACCTTTTGATTTATGCTGAGTGTGGACAGGTAATATAGTTTTGTTATTCCTTTCCAAACTAAAAAGCAGAATGTCAATCAAATGtcttttaaaggggaaatctgggtTTCATCAACATTTTGGGACTTAAATGAATTATCTGCCTAACCATTGATTCTTACAGAATATAGCTTTAATGCCTCGTGAGCATAGTTAAGCTGTcctaccccccaaaaaatgtacagCCCAAACGTAAGTTTGTTACTCCActgtttgtaaaaaataaataaatgtttaattgttaacaaactatagcttcaAAGCCTGTTTAACTATTATTTTGATATCCTAGATAGTCAGTCGTTTCAATAGCTCAGTTTATGTTTttcagtggttacatttctcctgcCCGTCCCTCAGCTGTTAACCAAACAATAGTCGGGGAATTTATTATTTGAATCCAAGATTGCCCTTCCATAATCAGGCAGGGACCAAGTATTTTCAGTTCAGCAGGTTCCTGGTaacgtgtgtgtatatacattttattttttagtgTGCATAAACGAAAACGAGCGTTTATTGGACAAGTGCAGGTTAGTGAGTCGCCCGGTTTTGGACATATTCGTTCCTAGTGAATGCGCACCTGCGTTCGATGTTCTAGGCATCTGTTAAATTACAAATGTATAGTTAATTGAGCATTCCTATGTAGTGAAACCTATACTGGAAATAGTTATATTGGTTTGTACAGCCTGTCATTCCTACTATCCGGTGCCTTTTGGTCGTCATAactttattaaaaaaaaacttgtgtgtgcatatgtattttATCAGAAAGCACACGTTTGACTTTCATAAAATATTGGTCAAACTCGGGCACTAAAATCCCTGTTGTGTGCATGATCTTATACAGTCCATTGCATAATCCTAACGGTGGCAATTTGGAGCATAAATTAGCCATAGCTCTGTGTGATTTAAGATAACATAATCGTGAACACTTAAAGGATGTTAACTTCTTTATGAAATGTTTTTTAAGATTTTGCAATTTGATTAATTTTCTCTCATTTAGCCTAACAAAGGAAATGTATGACTAGCATAATGAAAAATGCATAAAACcgagtgttttatttatttacatttggcACAATTGTCCCCCCCTAAAACGATGTCCTGAACGTGATTGTGGGAAGGGCATGTTTTCTTAATAAATGAGAATTGCTACATACTAAGGGAGAAAAGTGATATCGGGGCACACATTTTAAATTCAATAGTTTATATTTCTCGTAGAAGTTGAATAACACGTTGGGTTGCATAAACGCCTCAAAATGCGTAGCATTCCCTTTCAAGATCTATATTTTTGTGTTTTTAAAGTATGGACGCCTGACATTAATTCCCCTTCCCGATTGTTTAATCTCCAAATAAAATACTTAAAACCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU886164 lncRNA upstream 16301 19076112 ~ 19076767 (+) False G777707
TU886165 lncRNA upstream 16301 19076134 ~ 19076767 (+) False G777707
TU886166 lncRNA upstream 16423 19076112 ~ 19076645 (+) False G777707
TU886167 lncRNA upstream 16423 19076134 ~ 19076645 (+) True G777707
TU886161 lncRNA upstream 18510 19072513 ~ 19074558 (+) True LOC110532947
TU886329 lncRNA downstream 168317 19276224 ~ 19276807 (+) True G777865
TU886357 lncRNA downstream 201288 19309195 ~ 19309430 (+) True G777889
TU886385 lncRNA downstream 236713 19344620 ~ 19349872 (+) True G777913
TU886378 lncRNA downstream 291606 19399513 ~ 19400279 (+) True LOC110531683
TU887563 lncRNA downstream 437164 19545071 ~ 19555880 (+) True G778967
XM_036987514.1 mRNA upstream 19297 19070843 ~ 19073771 (+) False LOC110532947
LOC110533003 mRNA upstream 30757 19061168 ~ 19062311 (+) True LOC110533003
XM_021614991.2 mRNA upstream 83751 19007551 ~ 19009317 (+) True si:dkey-165a24.9
XM_036987513.1 mRNA upstream 85726 18995065 ~ 19007342 (+) True ugt5g1
XM_036987512.1 mRNA upstream 86774 18995065 ~ 19006294 (+) False ugt5g1
LOC118966168 mRNA downstream 23972 19131879 ~ 19144863 (+) True LOC118966168
XR_005053200.1 mRNA downstream 85690 19193597 ~ 19194732 (+) True LOC118966013
XM_021614999.2 mRNA downstream 228734 19336641 ~ 19338562 (+) True LOC110531678
XM_036987523.1 mRNA downstream 232820 19340727 ~ 19343839 (+) True LOC110532958
XM_036989270.1 mRNA downstream 256773 19364680 ~ 19370927 (+) True LOC110532960
TU885868 other upstream 435494 18656331 ~ 18657574 (+) True LOC110531664
TU885818 other upstream 593050 18499614 ~ 18500018 (+) True G777396
TU885567 other upstream 984586 18108019 ~ 18108482 (+) True G777165
TU885507 other upstream 1087400 18003267 ~ 18005668 (+) True G777113
TU885503 other upstream 1090886 18001889 ~ 18002182 (+) True G777111
TU887666 other downstream 709781 19817688 ~ 19824606 (+) False LOC110531694
TU887667 other downstream 709781 19817688 ~ 19824606 (+) True LOC110531694
TU887801 other downstream 768361 19876268 ~ 19892447 (+) True LOC110531697
TU887900 other downstream 901609 20009516 ~ 20022036 (+) False LOC110531703
TU887902 other downstream 901609 20009516 ~ 20023468 (+) False LOC110531703

Expression Profile