RNA id: XR_005053200.1


Basic Information

Item Value
RNA id XR_005053200.1
length 829
RNA type mRNA
GC content 0.42
exon number 3
gene id LOC118966013
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 19193597 ~ 19194732 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATCTTTCTAATATCAGTTAGATCATGAAGAACAAACTACAAGAAAGGGGCATAGCTGACACCTATGAAGGAATTTTTTCACACGCTTGAGTCTGATACAGCAACGTACTGCGGTCGAAGCCTATTCATGATGGACTTTGGAGAAAAAGACAAGATGACCAGTATACACATCAGAAGGACAATGATGAAACTCTGTCTGTTATATGAAGAAAATCTGTTATTCCGAACAGCTTTGTCTCTTGCTGTTGTTCTCACTCAGTCTGATGTTTGGAGCACCTTCACTCTTGGAGACGCAGTTGATTTGGAATGCTTCATCACTGTGGATGACAGGACAAGCCCCAGATGTTATCTCTGTATTCTCACTGCAATTGTCTTTGGAGAGTTTGACTAAAAGCTTTGCTTTGCTACAAGGAAGAGTGGCACCAGATTTGTGCTGACCATCTCAGATTCCACGGCATCCAACATGGGGATGTATTACTGTGCTGCAATTGATTATGAAAGCATGATCTTCGGGAGTTGTGTTTTTTTGATACATTCAGGTGTTTTATCTTCTATTTTAGCAAATATATGTTGTATTTGGAAATTGTGCAAGTCATTGATAGTAATGTGATTTTATAGTCCTGGAAAAGCTGCAGATTCCAGGACCCAGCATGTTGAACAGTAGTCTGTGTCTGAGTCAGTCTAGCCAGAAGAGTCTGAACTGTAAAATACACACAGACCTGTGCAGGAGAACACAGTGTCTATTGGTTCAGACATGGCTCAGGAGAATCTTGTCCAGGAATCATTTACACCCATGGAGACAGGAGTGATCAGCGTGAGAAGAGCCCCGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU886164 lncRNA upstream 116830 19076112 ~ 19076767 (+) False G777707
TU886165 lncRNA upstream 116830 19076134 ~ 19076767 (+) False G777707
TU886166 lncRNA upstream 116952 19076112 ~ 19076645 (+) False G777707
TU886167 lncRNA upstream 116952 19076134 ~ 19076645 (+) True G777707
TU886161 lncRNA upstream 119039 19072513 ~ 19074558 (+) True LOC110532947
TU886329 lncRNA downstream 81492 19276224 ~ 19276807 (+) True G777865
TU886357 lncRNA downstream 114463 19309195 ~ 19309430 (+) True G777889
TU886385 lncRNA downstream 149888 19344620 ~ 19349872 (+) True G777913
TU886378 lncRNA downstream 204781 19399513 ~ 19400279 (+) True LOC110531683
TU887563 lncRNA downstream 350339 19545071 ~ 19555880 (+) True G778967
LOC118966168 mRNA upstream 48734 19131879 ~ 19144863 (+) True LOC118966168
XR_002474737.2 mRNA upstream 85690 19093068 ~ 19107907 (+) True LOC110531675
NM_001160608.1 mRNA upstream 87609 19102092 ~ 19105988 (+) True rbm4b
XM_036986922.1 mRNA upstream 87634 19087663 ~ 19105963 (+) False rbm4b
XM_036986920.1 mRNA upstream 87634 19101987 ~ 19105963 (+) False rbm4b
XM_021614999.2 mRNA downstream 141909 19336641 ~ 19338562 (+) True LOC110531678
XM_036987523.1 mRNA downstream 145995 19340727 ~ 19343839 (+) True LOC110532958
XM_036989270.1 mRNA downstream 169948 19364680 ~ 19370927 (+) True LOC110532960
XR_005053201.1 mRNA downstream 201235 19395967 ~ 19399905 (+) False LOC110531683
XM_036987519.1 mRNA downstream 201235 19395967 ~ 19400305 (+) False LOC110531683
TU885868 other upstream 536023 18656331 ~ 18657574 (+) True LOC110531664
TU885818 other upstream 693579 18499614 ~ 18500018 (+) True G777396
TU885567 other upstream 1085115 18108019 ~ 18108482 (+) True G777165
TU885507 other upstream 1187929 18003267 ~ 18005668 (+) True G777113
TU885503 other upstream 1191415 18001889 ~ 18002182 (+) True G777111
TU887666 other downstream 622956 19817688 ~ 19824606 (+) False LOC110531694
TU887667 other downstream 622956 19817688 ~ 19824606 (+) True LOC110531694
TU887801 other downstream 681536 19876268 ~ 19892447 (+) True LOC110531697
TU887900 other downstream 814784 20009516 ~ 20022036 (+) False LOC110531703
TU887902 other downstream 814784 20009516 ~ 20023468 (+) False LOC110531703

Expression Profile