RNA id: XM_021614999.2


Basic Information

Item Value
RNA id XM_021614999.2
length 1317
RNA type mRNA
GC content 0.43
exon number 6
gene id LOC110531678
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 19336641 ~ 19338562 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGGACGACAAAAGGACATGCAATCCACAGAAGAGGACGATGACAATACTGTGTCTCGTAATCTCTCTTTTATTTAGAGCAGTGTTGTCCATTGGTATCATTACTCAGTCTGATCTTTTGAAGACCTTCATCCCTGGAGACACTGTTTATTTGAAATGCTTCATCTCTGGGACTGGCGGAGACTACTACAACTGGTTCAAACTAACAGTAGGACAAGCTCCAGTGATGATAGTATCTCTTTACCTTGACTCAAAAGATCCAACGCTCTATGGGGAGTTTGACAACAACCCTCGGttttctgcagagaagaacggagATAGTTTTGTGCTGACCATTTCAAATGCCAAGCCATCGGATGTGGGGATGTATTACTGTGCTGCACGTGATTATGATGGCATGATCTTTGGAAATGGTATATTTCTGATGCATAAAGGTGCAGGGTCCAGGAACCAGCATCTTACTCAGCAGTCTGTGTCTGAGTCAGTCCAGCCAGGAGACTCTGTGACTCTGAACTGTACAATACACACTGAGACCTGTGCAGGAGAACACAGCGTCTATTGGTTTAGACAAGGCTCAGGAGAATCCCGTCCAGGAATCATTTACACCTATGGAGACAGGAGTGATCAGTGTGAGAAGAGCCCTGAGGCTGGATCTCCTACACAGAGCTGTGTCTACAACCTCCCCAAGAAGAACCTCAGCCTCTCTGATGCTGGGACTtactactgtgctgtggccttatGTGGGGAGATACTGTTTGGAAATGGGACCAAGCTGGAGATTAGTAACAATTGTGGAGACCCTCTTCTCTTATTGTACTGCCTGAGCTCAGCATTGGGTCTCTCATTTATCCTGATACTTTTCCTTGGTTACATCATGTACAAGATGAACAAGAGAAAGTGTCTGCAGTGCAGAGGACCCGTCTCTCAGATAAGAAGTCCAGCAGTCTCTACTTCAGATACAGGGGCCCAAGATGCAGACAGTCTCCATTATGTAGCTCTGAAACTGAGCAACAAGAAGAATAGGTCTAGAAGACAGAGAAGCAACATGGAGGAAGAGACGGTGGTCATGTACTCTGGGATCAGACAGTAGAACTGGATGAATTAAATTCATTTAATACCAGATAGCTCTTAACTAGCTCTAACGTTATTAGCTTTATTTGAATGCTTCAGTAAAATGTGTTGTAATCAGTGGTCATAGTTTTTCAAGTGTAATATAAAGTGCAAATAGAAAAATAAAGCATTTCCATCTGTTGAAACCAAATTAATTTGAATAAGTTGAACTCAATGCATTTTGTTCACACACCTCTGGGGTCATAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU886357 lncRNA upstream 27211 19309195 ~ 19309430 (+) True G777889
TU886329 lncRNA upstream 59834 19276224 ~ 19276807 (+) True G777865
TU886164 lncRNA upstream 259874 19076112 ~ 19076767 (+) False G777707
TU886165 lncRNA upstream 259874 19076134 ~ 19076767 (+) False G777707
TU886166 lncRNA upstream 259996 19076112 ~ 19076645 (+) False G777707
TU886385 lncRNA downstream 6058 19344620 ~ 19349872 (+) True G777913
TU886378 lncRNA downstream 60951 19399513 ~ 19400279 (+) True LOC110531683
TU887563 lncRNA downstream 206509 19545071 ~ 19555880 (+) True G778967
TU887652 lncRNA downstream 256626 19595188 ~ 19595413 (+) True G779052
TU887684 lncRNA downstream 297746 19636308 ~ 19706947 (+) True G779083
XR_005053200.1 mRNA upstream 141909 19193597 ~ 19194732 (+) True LOC118966013
LOC118966168 mRNA upstream 191778 19131879 ~ 19144863 (+) True LOC118966168
XR_002474737.2 mRNA upstream 228734 19093068 ~ 19107907 (+) True LOC110531675
NM_001160608.1 mRNA upstream 230653 19102092 ~ 19105988 (+) True rbm4b
XM_036986922.1 mRNA upstream 230678 19087663 ~ 19105963 (+) False rbm4b
XM_036987523.1 mRNA downstream 2165 19340727 ~ 19343839 (+) True LOC110532958
XM_036989270.1 mRNA downstream 26118 19364680 ~ 19370927 (+) True LOC110532960
XR_005053201.1 mRNA downstream 57405 19395967 ~ 19399905 (+) False LOC110531683
XM_036987519.1 mRNA downstream 57405 19395967 ~ 19400305 (+) False LOC110531683
XM_036987520.1 mRNA downstream 57405 19395967 ~ 19443151 (+) False LOC110531683
TU885868 other upstream 679067 18656331 ~ 18657574 (+) True LOC110531664
TU885818 other upstream 836623 18499614 ~ 18500018 (+) True G777396
TU885567 other upstream 1228159 18108019 ~ 18108482 (+) True G777165
TU885507 other upstream 1330973 18003267 ~ 18005668 (+) True G777113
TU885503 other upstream 1334459 18001889 ~ 18002182 (+) True G777111
TU887666 other downstream 479126 19817688 ~ 19824606 (+) False LOC110531694
TU887667 other downstream 479126 19817688 ~ 19824606 (+) True LOC110531694
TU887801 other downstream 537706 19876268 ~ 19892447 (+) True LOC110531697
TU887900 other downstream 670954 20009516 ~ 20022036 (+) False LOC110531703
TU887902 other downstream 670954 20009516 ~ 20023468 (+) False LOC110531703

Expression Profile