RNA id: XM_036987523.1


Basic Information

Item Value
RNA id XM_036987523.1
length 1088
RNA type mRNA
GC content 0.46
exon number 6
gene id LOC110532958
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 19340727 ~ 19343839 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGATTATATATTGGACAATCTTTTTGTATTATGCCAATTTGGGTTGTGCACTTAACAAGGATGTAATCCAACCAGACCCTGTGATAGTTACACAACTGGGACAAAGTGTATCACTCAATTGCTTTTGTCGATCTCAATTGATCAGAGTCTCTTGGTTCAAGCAAACTGTTGGACAGAAGCCTCTTCTCATGGCATCATCATATTATGGCAGTGAAAATAGTTTCTATTTCAACAACTTTACCGAGGACTTTACTGAGACTAAACGTTTGAGTGTGAACAGAGGAGTTGACAGCTGTAACCTGACCATCTCCAAGACAGTGTCGGGGGACTCATCTACATACTACTGTGTTAGTTTGTCAGCGAGGGAAGCCAAATTTGGAGAAGGAACTGTTTTAATTGTCAAAGATTCAGGTTCCAACAGCATGTCTGTGCTCCAGCAGCCTGTGTCTGAGTCAGTTCAGCCAGGAGACTCTGTGACTCTGAACTGTACAATACACACTGAGACCTGTGCAGGAGAACACAGTGTCTTTTGGTTCAGACATGGCTCAGGAAAATCCCATCCAGGAATAATTTATACCCATGGAGACAGTAATGGTCAGTGTGAGAAGAGCCCTGAGGCTGAGTCTCCTACACAGAGCTGTGTCTACAGCCTCCCCAAGAAGAACCTCAGCCTCTCTGATGCTGGGACTTACTACTGTGCTATGGCCTCATGTGGGGAGATACTATTTGGGAATGGGACCAAACTGGAAATGGACTATGGTTGTAAGGAGTACCCTGTTCTCTTGGTGTACTGCCTGGGTGTAGCGTTGGCTCTTTGTGGCATCATCATCATTGTCCTTGGTTGTGTTACTTACAAAATGACCAAGAAAATCTCTCTGCTGTCCAGAGGAACGCACCCTCAGCCAAGTGGCCCGGCAGTCCACAGTTCTTATAACCAGGATCAAAAAGACAACGACACACTCACGTCGGTCCAttacgctgctctgaatgtcatCCACAAGAAGCCAAAGACCCGGAGACAGAAGAGAGCCATGGAGAGAGACACTGTGTACTCTGGGGTGAGGTGCCAAAACACGGACTGAAAAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU886357 lncRNA upstream 31297 19309195 ~ 19309430 (+) True G777889
TU886329 lncRNA upstream 63920 19276224 ~ 19276807 (+) True G777865
TU886165 lncRNA upstream 263960 19076134 ~ 19076767 (+) False G777707
TU886166 lncRNA upstream 264082 19076112 ~ 19076645 (+) False G777707
TU886385 lncRNA downstream 781 19344620 ~ 19349872 (+) True G777913
TU886378 lncRNA downstream 55674 19399513 ~ 19400279 (+) True LOC110531683
TU887563 lncRNA downstream 201232 19545071 ~ 19555880 (+) True G778967
TU887652 lncRNA downstream 251349 19595188 ~ 19595413 (+) True G779052
TU887684 lncRNA downstream 292469 19636308 ~ 19706947 (+) True G779083
XM_021614999.2 mRNA upstream 2165 19336641 ~ 19338562 (+) True LOC110531678
XR_005053200.1 mRNA upstream 145995 19193597 ~ 19194732 (+) True LOC118966013
LOC118966168 mRNA upstream 195864 19131879 ~ 19144863 (+) True LOC118966168
XR_002474737.2 mRNA upstream 232820 19093068 ~ 19107907 (+) True LOC110531675
XM_036989270.1 mRNA downstream 20841 19364680 ~ 19370927 (+) True LOC110532960
XR_005053201.1 mRNA downstream 52128 19395967 ~ 19399905 (+) False LOC110531683
XM_036987519.1 mRNA downstream 52128 19395967 ~ 19400305 (+) False LOC110531683
XM_036987520.1 mRNA downstream 52128 19395967 ~ 19443151 (+) False LOC110531683
XM_036987521.1 mRNA downstream 52387 19396226 ~ 19400305 (+) False LOC110531683
TU885868 other upstream 683153 18656331 ~ 18657574 (+) True LOC110531664
TU885818 other upstream 840709 18499614 ~ 18500018 (+) True G777396
TU885567 other upstream 1232245 18108019 ~ 18108482 (+) True G777165
TU885507 other upstream 1335059 18003267 ~ 18005668 (+) True G777113
TU885503 other upstream 1338545 18001889 ~ 18002182 (+) True G777111
TU887666 other downstream 473849 19817688 ~ 19824606 (+) False LOC110531694
TU887667 other downstream 473849 19817688 ~ 19824606 (+) True LOC110531694
TU887801 other downstream 532429 19876268 ~ 19892447 (+) True LOC110531697
TU887900 other downstream 665677 20009516 ~ 20022036 (+) False LOC110531703
TU887902 other downstream 665677 20009516 ~ 20023468 (+) False LOC110531703

Expression Profile