RNA id: XM_021614386.2


Basic Information

Item Value
RNA id XM_021614386.2
length 2909
RNA type mRNA
GC content 0.42
exon number 9
gene id il13ra1a
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 19748164 ~ 19755992 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTCAAACTCCGCCCACTTTCATTTCAGAGCAGGATCAGGAGAATTGTAAGATCCTTCTTTCTTAGCACAACAAACAGCTGTTTTCCACGTTTCTTTTCGGTTTTGTTGGATCCCTGGTTTTCTCCATCCCTTTTTAACTGAACAGCGCAACATCTGTTGAGAACTTTATTTTGGATAGAATTCGGTCGGGACTGACAGGTCTTGACAGAGATCACTAGCATAGGTTGATACAATGTACAAATGCTGGGGAGTTTTCGTCTTGTACTATTTCGTTTCATTCGTAGCTACACAGCCTGAAACAGAGCTCCCATCACCAAGAAATGTGACTTTCTCTTGGACGAACGAGTTCTGCTGGGAGCTTTCATGGAGTCTACTGGAGAATGTTGATAGTCAGAGATGTAAATACCATATCAATATATCAAGGATAGGCAAGAATAACATAATCAGGAGGAAGAAGGAAACACGGTTAGAGGAGTGTTTTCCTCTGATGGGAGGTGTGCGTTTCTTCATACAAACTCAGTGTAACAAGACACAGATGAGTCAAACTGTAGTTCACACCATCCCTGCCCCCACAGAGTTGGTGACGAACTTCAAATGTTTTCTCTACACCTCTAAGGCCATGAACTGCAGCTGGCTCCTAGCCAATCAGGTCCCAGAAGACCTTCAGCTTTACTACGGGTTAAAAAATATGAGTAAGGTATCGGAATGCAATGAGTACCTGTACAACGGCAATCAGAGGACAGGATGTCATCTGAGAGGAGACTCCCACACGCGGATCTTCTTCCAGGTCAATGGGACTCTCAACGGTTCATCGGTACGGAATACCTTCGAAGTGAATCCTCAGGACCATGTGGTGCAGCCTATACCTCTTGATTTGAAGATCACAGAGGAAGGGAGCAACCTCAATATTAGCTGGATTTCACCAGACATAAGACATCCACACTGTTGGAAGTACGTCATCAACTATACCAGATGTAAAATACCTGAGAGTATGTCCTTAGAAGACAAGACTTGGATCATGGTGAACTATGACCCTCACTGTCAGTATCGTGTTCGCATTAAGCCCATCTTTTTACAATTGTGTGGTATGGGAGAGGGTGACTGGACTGAGGAGGAAATATATGgtAAAGATGGGAATCGGGATTGGCACCTGCATGTTGCAGCCGTCTTCATTTCAGTCATGGCGGTTATAGTTTCCATCCTGGTTTGTTTTTGTATAAGGAAACACAAGGACAAGATCCTCCCCAAAGTTCCCAAGCCAACCAACCTCATCAGTGATAtgttcaacaacaacaatgaGATGAGCATTAATGAGAACCTCTACATCCCAGCACAAGAGGAAGTAGACTGTAAGATCACCCTAGTACAATCCCCTCTTCCTCAGCAGCCAGAGTCATGAGAAACATGAATATACAGTGAACCTGTGGACAAGCTGGTAGTGGCCCAGCAGACTGGGAGGACCTCAGTGTTTTAACCTTGTGTGGTGGTGGCTTTTTGACTCAACATGGGATACTTTGAGATTTAACAACAGTAACTGGGATCCCCGGACTGTCCCAGGACCACTCTTCACATTTCCTGAATTTTTTTTAATGACAAGACCCGGGAAACTACAACATTTCCCACCAATGTTGCACTAATGCAATTCCACAAAATACACACGCGCAGCAGCAAATTAGCTAAAAATAAAATGGCACATTATCCAAACAGGTAAGCTTTTACCTTAGCTTATTTACTTCACACAAAGTCTCCATAAATTCAAAGCACACACATACTTGACACTGCCTGACTGCACACGAGAAACAAATGCGATTTACAGTTATCATCAGAACTCAAAATTCGATCCCGGTCCGACCCGAGCCTGGTGAGATGAAGTCGGAGCCCAGGCCTAGTCCGACATCACAGAAATAAAATAGCCCGAATGCGAAAAAAAGCAAGATTTCTGGAAAACAGTAGGCTATGTTGATTTAAACTGGTGTTGAGAACAAAATGGCGGAGGTGGACGGTAGCGGAGTGAGGAGACGAGGAAACGGACATTGGGCCAGAaaaagcacagagagaggaaaactCACCTTATTATGATCATCTGAATGATGAAAATATTGTAAAAAGGTATTCTAATGCAATTGAAGGCATGTATCAAATTCATGCTTATACTGAAACTCCCAAAGTCATATCCAACCGTTATACTAATTTAAAGCAATAGTTGTGTGTGGTCACGTAGATTATAATTTCAGCACCGTTTTGACCGGGCCAGCGCCATCACGCTGCTTTGAGACAAGCTTAGGGGACTCGTCTAGATAAATCAatgtcacatttttgttttcactgaatctccatttggATATTTGGTAACCATTAGGCTACGTTGTAGTGTGCTAATGataatctttttttttctctatttTGCTCTATTTTGCTCTTCACTTGCGTAGTAGTTTGTCCTACTCCCAACCAAAAACCTGTGACATATCTGAtaatcaatcaatgtgattttgtttcactgaatctctgtCTATATATTTGGTCAATTGCTCTCTGGCTGTGCAAGTGGAAATGGTAGCTCATTTATTCATTTGCTCATCTATCtttgatcagaaacatttagcatgcaataatttagcccaaatcaaatgtattatttttctATTGACTCACTAGCCTTTAAATAAAGGCTATTTACCTATCGTCCCAATCCCAAGGAAACCCAAAATCCTTCATTGTAATCCATAGGTTGCTGTATCAGAGCACGGCTCGCCTATGCTTATCAAAATACAGCTAGAACATTTCCCCcgcctctctgcactgtctcgtatTGCTGCCCTAATGAGAGCTTCAATAGAGCTTCAATATCAATGAGAGCTTCAATATCAATAAAGATATCAATAAAGATGTGTTCATTAAACTTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU887684 lncRNA upstream 41217 19636308 ~ 19706947 (+) True G779083
TU887652 lncRNA upstream 152751 19595188 ~ 19595413 (+) True G779052
TU887563 lncRNA upstream 192284 19545071 ~ 19555880 (+) True G778967
TU886378 lncRNA upstream 347885 19399513 ~ 19400279 (+) True LOC110531683
TU886385 lncRNA upstream 398292 19344620 ~ 19349872 (+) True G777913
TU887738 lncRNA downstream 7936 19763928 ~ 19764140 (+) True G779137
TU887739 lncRNA downstream 9215 19765207 ~ 19765716 (+) True G779138
TU887771 lncRNA downstream 93609 19849601 ~ 19850354 (+) True LOC110531693
TU887788 lncRNA downstream 106682 19862674 ~ 19870992 (+) True G779183
TU887792 lncRNA downstream 108922 19864914 ~ 19872043 (+) False G779184
NM_001246338.1 mRNA upstream 24623 19706045 ~ 19723541 (+) True il13ra1b
LOC110532966 mRNA upstream 43986 19616135 ~ 19704178 (+) True LOC110532966
XM_021615008.2 mRNA upstream 176957 19569254 ~ 19571207 (+) True LOC110531687
XM_021615002.2 mRNA upstream 241664 19503965 ~ 19506500 (+) True LOC110531681
LOC110532963 mRNA upstream 270483 19473444 ~ 19477681 (+) True LOC110532963
trnar-ucu-3 mRNA downstream 13802 19769794 ~ 19769867 (+) True trnar-ucu-3
XM_036987525.1 mRNA downstream 15174 19771166 ~ 19806842 (+) False LOC110531692
XM_036987526.1 mRNA downstream 15176 19771168 ~ 19806842 (+) True LOC110531692
LOC110532967 mRNA downstream 51725 19807717 ~ 19817403 (+) True LOC110532967
XM_021615013.2 mRNA downstream 61671 19817663 ~ 19824539 (+) False LOC110531694
TU885868 other upstream 1090590 18656331 ~ 18657574 (+) True LOC110531664
TU885818 other upstream 1248146 18499614 ~ 18500018 (+) True G777396
TU885567 other upstream 1639682 18108019 ~ 18108482 (+) True G777165
TU885507 other upstream 1742496 18003267 ~ 18005668 (+) True G777113
TU885503 other upstream 1745982 18001889 ~ 18002182 (+) True G777111
TU887666 other downstream 61696 19817688 ~ 19824606 (+) False LOC110531694
TU887667 other downstream 61696 19817688 ~ 19824606 (+) True LOC110531694
TU887801 other downstream 120276 19876268 ~ 19892447 (+) True LOC110531697
TU887900 other downstream 253524 20009516 ~ 20022036 (+) False LOC110531703
TU887902 other downstream 253524 20009516 ~ 20023468 (+) False LOC110531703

Expression Profile