RNA id: XM_036987526.1


Basic Information

Item Value
RNA id XM_036987526.1
length 5103
RNA type mRNA
GC content 0.50
exon number 15
gene id LOC110531692
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 19771166 ~ 19806842 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agagagagagagagagaggaatgcgtCGCTAATGAGTAAACGGACCATCGCCCGAGCACGAAAGAGCGGACAACGGAAAGGGGGAAAGGAGGAAAAACGGAGAAATGTTGTAAACCGCAACAAAAAAAAGCAGTAAGGGGAGGTGGAGAACGAAGAAAACCGTCATATATTAATTGGAAGGATTACAATTACCCTATACTGGTGAATAGAATCCAACTAGGATTTTTAATGCTGCCCTCACGGAGAATTGAGCTAACGGACTTACTGGTCTTCTGAACCATGCAGCGGCTTTTGCTCCTGAGTTTGGCGTTGAGTTTTCACCGTGTGTGGACAGCGCGTTTCTCCCAGGAGCCAGCGGACCAGTCGGTGGTGCTGGGCCAGAGGGTGATTCTGTCGTGTGTTGTGTTTAACTACTCGGGCATTGTGCAGTGGACCAAGGATGGACTGGCCCTGGGCATCGGAGAGGACCTCAGGGCCTGGCCGAGGTACCGTGTGTTGCGGGTGCAGGAGCTGGGCCAGTATAACCTGGAGATCATCTCATCTGAACTGTCTGATGACTCCCTGTACGAGTGTCAGGCCCCAGACGCTGCGCTACGTTCGAGAAGAGCCAAACTCACCGTCCTCATCCCCCCAGATGACCCAGTGATAGACGGGGCCCCTGAGGTGCTGCTGAATGCAGGGGACCACTATAACCTGAGCTGTGTGTCCCGCGGGGCCAAGCCCCCTGCCATGATAGAGTGGCAGAAAGATGGGATCCCTGTAGATGGAGCAGTCAGCACCACCgAGGTGCTCCCGGACAGGAAGAGGGTGACGACCCACAGCTTCCTGCCCATCCACCCAGTGGACACAGACACAGGGAGGAACTACAGCTGTGTGGCCAGTAACCTGGCTATCCCCGCCGGGAAACGCACCACCGTCACCCTCAACGTACACCACCCCCCTACGGTGACACTGTCCATCGAGCCTCGCTCCGTCTTAGAGGGGGACAGAGTTACCTTCACCTGCGCCGCCTCCGCCAACCCTCCTATCATGGGATACATGTGGGCTAAAGGTGGAGTGATCCTGCAGGGGGCCAGAGAGAGTGTGTTCACCACCAAAGCTGACCATTCCTTCTTCACTGAGCCAGTGTCCTGCTCAGTGTTCAACGCCGTGGGCAAAACCAACGTCAGCATCCTGGTCGATGTACACTtTGGTCCTATTCTGGTAGTGGAGCCCAGGCCAGTGACAGTGGACATAGACTCTGATGTCACTCTGAACTGCAAATGGGCCGGCAACCCTCCTCTAACACTTACCTGGACCAAGAAGGGCTCCAATATGGTCCTTAGTAATAACAACCAGCTGTTCCTGAAGTCAGTGAGCCAGGCGGACGCTGGGCAGTACGTGTGTAAGGCCATCGTCCCCAGGATcggagtgggagagacagaggtcaCGCTCACTGTCAACGGTCCCCCCATCATCTCCAGTGAGCCCGTCCAGTATgcggtgaggggggagagaggagaggtcaaATGCTACATCGCCAGCACACCTCCACCGGACAAGATTgtGTGGGCGTGGAAAGAGAACGtgtgggagaaggagaaggggactCTGTTGGAGAGGTACACGGTGGAGCAGAGTAAACCTCTGTCTGAGGGAGGGGCTGTCCTCTCCACCCTCACCATCAACAACGTCATGGAGGCTGACTTCCTGTCCACCTACAACTGTACTGCCTGGAACGCCTTCGGACCCGGGACCATGATCATCACCCTGGAGGAGACTGaGGAGGTCCCAGTGGGTATAATAGCAGGAGGGACTGTTGGCTGCACCATCCTGCTGTTCCTGTGTTTACTAGTCCTGGTGCTCATCTTCTACCGGCAGCACAAAGGCAGTCGTCGCGGGGTCACGCTGGGTAAGCCAGACATCAAGGTAGAGACAATAAACAAGGAGACCCACAGTCTGGAGGAGGACTCCGGCAGTGTTTCCACGGCATCACGCATGGTCAAGGCCATGTACTCGcccTTTAAAGACGATATAGAACTGAAACAGGACCTACGCAGCGACACTCTAGACACACGCCAGGAGTACGACCTTAAGgatcCCACCAACGGCTACTACAACGTGCGAGCCTCCACCCACGACGAGGGCCGTCCCGCCTCCCGCTCCATGCACTACTCCGACTACCGGCCCTCCAACACCCCAGGGGGCGCTGCCTCCATAAGCAGCAGTGTTGGAGGATCAGGGGCCACGGCCAGCGGAGGAGGCCCTCCAGGCCCAGGGCCCCTCAACACCCCTGGCCGCCCCAGCTGCTACGACCCCCGTCCCCCCTCCAGACTGTCCCATAACAGCTATGCTCAGTTTAACACATTCACCCGGGCTGGGCAGAGCCAGCCGCCCCCTCCCAACCCCCCGCCGCAGACCAGCGACTTCCCTGGGGACTGCAGCCTGTTGGACTCCTCTCAACTGGCATACGACAACTACGGCTATCCCTCTCACCCCTATACCCCCTACCGCATGGGATTCGCCCCGCCCACTCTGGCTCCCTTGGAAGTCGGTCCGTCGTATGAGATGTACGGGGTGGGGCCGGGGGTGGGCCCTGTGCCAGGGGTGGGGCCTGGTGTGGGGGTGGGGCCTGGGGCAGCTCCGTCAGGGTCAGAGACTGGACTGGGGAAGTATGGAAGCTCGACCCGCTTCTCCTATACCTCGCAGCATTCTGACTACGGCCACAGAGGGCACACACAGAGGATGCAGACACATGTGTGAGATACAGTTCATTCTCACGTAGAGGGTGAGGGTGCATTCTCatacacactgtcactcagacgcacacacacattcacattctcaaacatacacacacaaacacacttgagcgtacacagacacacacacactgagacacacatgcagacagacacacacacacacacacacacacatacacacacacacacacacacacacacacaggagtttGCCCACGAGACAGGGAGGgtatgagaaagagagatagtCCAGATCAGTGGAAAATAGAGAGTATCCCAATGAGACAGAGGGGATTTCCTTGTAATCAGAATTCCAACACTCCCAGTGTTCAATTCTTCGCTCTGAAAGAGCAGAAAGCGAAAGTCACAATCAAGACCAGAGAAAATAGGACTAGAGAGAACAAGAGATCTTTAGATCTTAATTGTCAAAATGAATAGCAGAAGTGCTATGAATTTAGACTGTAATGAGTgacgagaggggggggggggggggggtgttacagGCAATTTATTCCATATACGATTGCCAAATATTAAAGTAAGGCATATCATGGAGAAATTGACCATCAAATATGGTACCTTCGCTCGTTCGTTGGGCGGGAGAAACCTCAACCAATGAGGAGTAATGACTGTCTGCCATTTTGTTTTAGCTGGTTGTTGTTTTATACAGTGATCTTAGAGCACATATATATCCCAGAATGCTTTACTTCATTGGCGCCATTGGTGCTGGTTAGTGGGGCCATGGTACGTTTTGCACTGCATTACAAACAGTATTCATTGCTTAGACATCCGTTATCTATATCTATAGCTGTATTATATATGTCTGTTTTTATTTGCACACCAACAAACTAGAGCTTTGTATtctattttttaacattttactGAATTATTTTTGTCATATTTCTGTGAAGGAGGTGTCTGTGGACCAAAATGTTCTAACTTGAGAGGGTTTAGTATTTGTTTGGGTGATATTCACCCCAACAAACAAAGAGAAACATGAAGAAGTATTTGTTGACCTGTTTCTGTCAGCCAATGATGACTGGCAGAATTCAGGAAGGGGGAGTATATACAGGAACCTTTTTACCAAGTGTCCATGTTGCTCTTTATTTTGATGTAAATCTTGGGTTACAAGCATTTATGCAGTAGATAGCATGCAGGAGGTCCTTATATTGGCAGGTGTTGTGTGTTGCTAGGCCTACCAAGGGTTTAGGTATTGAGGCAGTTCCGGGCATATGGAACTATAAGCCTGGTAGCCTGGGATCCAAACTGAAATCGCTTTGTTACACCATTTATATGAATATACTACATCATTGATATGATGAAACATAGCAAATTCAGCTTGGATCCAGGCTATAAGCCTTAGCCTGGTGCCCCCTGCTGAAATAGAAAGAGGTGAtgtggtagcctggtcccaggtctatttgtgctgtcttgcctaCTCCTGTGGTCATTGTCACACTTGCGAACAAACAGAGCTGGGACCATGGCTAGTGAGATGGTGTGTACAGAGGTTTAGAAGAGAGTGGCCTTAGGGAACATGTGGTAAACACTTTCATTACTCATACACAATCAGCCATGATGACGAGGCCTGAGGAGAATGTGTATAGAAAGGGGCAATGAAGGTTTTTCTACAGTATTGACATATAgtggtgtgtgattgtgtgaatGTGTATGGGTGAAAGAAAGAATGAGcaaaagggagatagagagagagagtgtgtgtgtgtgtgtgtgtgtgtgcacatctaTTTGTACAGTGTTTGTATAGATGTGtgaatggctgtgtgtgtatgtaacacATAGACATACCGTACTctacctgcgtgtgtgtgtgtgaatattgtatgcgtgtgtgtatgtctgtatgtgtttatgtgtgtgagtgttttagTAAtacagcatttcccaaactcggtcctggggcggATGTTTGGGTTTTCTGCCCTAGtactacacaactgattcaaataaacaagtcatcatcaagctttgattatttgaatcagctgtgtagtgttaggtgcaaaaaccaaaacatgccccctttggggtcccgaggaccgagtttggaaaaCGCTGCATTAATCTGTCCATATCATTTCTCTTCGCAATCCTGTTCCAATACTTGTATACCTCTGGTAGGACTGTATCCTGTATTATTGTGTCTTTGAATTTAGAAATACAATGTTTATCTTATTGTACTGTTCAACGTAGCAGAGAAAAACTGTTCAAAAGATGTACAACAAAAATCACATTTTCATTTTTTAAGTTCATTATCTccaatattttttaaaaatggtaTGTAATTATTTTTCCACAGTATTACAGAAATAAAAAGCACTGTTTTTTATAAAATTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU887739 lncRNA upstream 5452 19765207 ~ 19765716 (+) True G779138
TU887738 lncRNA upstream 7028 19763928 ~ 19764140 (+) True G779137
TU887684 lncRNA upstream 64221 19636308 ~ 19706947 (+) True G779083
TU887652 lncRNA upstream 175755 19595188 ~ 19595413 (+) True G779052
TU887563 lncRNA upstream 215288 19545071 ~ 19555880 (+) True G778967
TU887771 lncRNA downstream 42759 19849601 ~ 19850354 (+) True LOC110531693
TU887788 lncRNA downstream 55832 19862674 ~ 19870992 (+) True G779183
TU887792 lncRNA downstream 58072 19864914 ~ 19872043 (+) False G779184
TU887793 lncRNA downstream 58072 19864914 ~ 19872043 (+) True G779184
TU887799 lncRNA downstream 67645 19874487 ~ 19874811 (+) True G779189
trnar-ucu-3 mRNA upstream 1301 19769794 ~ 19769867 (+) True trnar-ucu-3
XM_021614386.2 mRNA upstream 15176 19748164 ~ 19755992 (+) False il13ra1a
NM_001246337.1 mRNA upstream 15178 19748189 ~ 19755990 (+) True il13ra1a
NM_001246338.1 mRNA upstream 47627 19706045 ~ 19723541 (+) True il13ra1b
LOC110532966 mRNA upstream 66990 19616135 ~ 19704178 (+) True LOC110532966
LOC110532967 mRNA downstream 875 19807717 ~ 19817403 (+) True LOC110532967
XM_021615013.2 mRNA downstream 10821 19817663 ~ 19824539 (+) False LOC110531694
XM_021615014.2 mRNA downstream 10826 19817668 ~ 19824539 (+) False LOC110531694
XM_036987527.1 mRNA downstream 18870 19825712 ~ 19853720 (+) False LOC110531693
XM_036987528.1 mRNA downstream 18870 19825712 ~ 19853720 (+) False LOC110531693
TU885868 other upstream 1113594 18656331 ~ 18657574 (+) True LOC110531664
TU885818 other upstream 1271150 18499614 ~ 18500018 (+) True G777396
TU885567 other upstream 1662686 18108019 ~ 18108482 (+) True G777165
TU885507 other upstream 1765500 18003267 ~ 18005668 (+) True G777113
TU885503 other upstream 1768986 18001889 ~ 18002182 (+) True G777111
TU887666 other downstream 10846 19817688 ~ 19824606 (+) False LOC110531694
TU887667 other downstream 10846 19817688 ~ 19824606 (+) True LOC110531694
TU887801 other downstream 69426 19876268 ~ 19892447 (+) True LOC110531697
TU887900 other downstream 202674 20009516 ~ 20022036 (+) False LOC110531703
TU887902 other downstream 202674 20009516 ~ 20023468 (+) False LOC110531703

Expression Profile