RNA id: XM_021615013.2



Basic Information


Item Value
RNA id XM_021615013.2
length 902
RNA type mRNA
GC content 0.40
exon number 5
gene id LOC110531694
representative False

Chromosome Information


Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 19817663 ~ 19824606 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TCACCTCAAACCACTAACTCTTCAGCCCTGCTCAACCTACATGCTTTTTACTGACTGAGCAGTCAGACGTCCAGTAAAAAATCATCTGTTGCTGTGTCCTTTTGTATACCTGTTGCTGTGATGGGAGGCAGATTCCTAGTTCTTTCAGCTCTTCCTCTGTGGATGAGCTTTGGCAGTGCTAcGGCCCTGGGTGAGTCTCAGATCTGCTATATCCTGGACGGTATCTTGTTTCTGTACGGTATCATCCTCACCGTGCTCTACTGCAGGCTCAAGTTTTTCCCACAGATGGTTCCGGTGACTGGGTCTGGGACAGAAAAGCCACCGAAAGCGGAGGAGGGTATCTATACGgGTCTGACCCCTCATGCTGCGGATACCTATGAGACCATCGGTCAGAAGAAAAGATTGAAGTAGCAGAGGGTGAAGAGTTGAAGAAGTCATCTGTCAAATCACTTTTGTCTCCAAGAATTTCCCAGGCCtcttatgtattttatttaacatagCTTTTAACGGTTTGAGAGAAAATGTATTCATTTTTTAACATTTACTTGCGTATGTGTGAACCTCCTTTGTATGTGTCGTaagagagagaaatgtgagaAGATTAAAGGGGAAGTTGAGCTGTGGGTAAAAATGCCCCACTTTTGACAGTGTATGTCTTCTTTGTATGCTACTTATACTAAAATGTCTTAGATTTAGCTTGAGATTGATGTTTTTGGTGTTTTCAAATATTTTTCTATATAGATCAATATACAGTTTTAGCAAATAATATACCCCTTTTTTACTCTTGAGATTTGTGTTCTGGGTGTACTTTAGGTATTTTCAAATATTTTTCTAAATAGATCAATATACAGTTTTAGCAAATAATATACCCCTTTTTTACTCTTGAGACTTGTGTTCTGGGT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU887739 lncRNA upstream 51947 19765207 ~ 19765716 (+) True G779138
TU887738 lncRNA upstream 53523 19763928 ~ 19764140 (+) True G779137
TU887684 lncRNA upstream 110716 19636308 ~ 19706947 (+) True G779083
TU887652 lncRNA upstream 222250 19595188 ~ 19595413 (+) True G779052
TU887563 lncRNA upstream 261783 19545071 ~ 19555880 (+) True G778967
TU887771 lncRNA downstream 25062 19849601 ~ 19850354 (+) True LOC110531693
TU887788 lncRNA downstream 38135 19862674 ~ 19870992 (+) True G779183
TU887792 lncRNA downstream 40375 19864914 ~ 19872043 (+) False G779184
TU887793 lncRNA downstream 40375 19864914 ~ 19872043 (+) True G779184
TU887799 lncRNA downstream 49948 19874487 ~ 19874811 (+) True G779189
LOC110532967 mRNA upstream 260 19807717 ~ 19817403 (+) True LOC110532967
XM_036987525.1 mRNA upstream 10821 19771166 ~ 19806842 (+) False LOC110531692
XM_036987526.1 mRNA upstream 10821 19771168 ~ 19806842 (+) True LOC110531692
trnar-ucu-3 mRNA upstream 47796 19769794 ~ 19769867 (+) True trnar-ucu-3
XM_021614386.2 mRNA upstream 61671 19748164 ~ 19755992 (+) False il13ra1a
XM_036987527.1 mRNA downstream 1173 19825712 ~ 19853720 (+) False LOC110531693
XM_036987528.1 mRNA downstream 1173 19825712 ~ 19853720 (+) False LOC110531693
XM_021615017.2 mRNA downstream 51682 19876221 ~ 19914138 (+) False LOC110531697
XM_021615018.2 mRNA downstream 51682 19876221 ~ 19914138 (+) False LOC110531697
XM_021615019.2 mRNA downstream 51682 19876221 ~ 19914138 (+) False LOC110531697
TU885868 other upstream 1160089 18656331 ~ 18657574 (+) True LOC110531664
TU885818 other upstream 1317645 18499614 ~ 18500018 (+) True G777396
TU885567 other upstream 1709181 18108019 ~ 18108482 (+) True G777165
TU885507 other upstream 1811995 18003267 ~ 18005668 (+) True G777113
TU885503 other upstream 1815481 18001889 ~ 18002182 (+) True G777111
TU887801 other downstream 51729 19876268 ~ 19892447 (+) True LOC110531697
TU887900 other downstream 184977 20009516 ~ 20022036 (+) False LOC110531703
TU887902 other downstream 184977 20009516 ~ 20023468 (+) False LOC110531703
TU887922 other downstream 215072 20039611 ~ 20040283 (+) True G779291
TU887946 other downstream 254897 20079436 ~ 20082054 (+) True LOC110531706

Expression Profile