RNA id: XM_036987527.1


Basic Information

Item Value
RNA id XM_036987527.1
length 4549
RNA type mRNA
GC content 0.48
exon number 12
gene id LOC110531693
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 19825712 ~ 19853720 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cTTGTAACAGGTGTACCCAAGAAAACAGGTAACCGCTCCTACTTTTGAGAAGCCAGAATATGGTGTGCTTGTGTCAAAGAAACAGAACATCATTTGTGCATTTCACTAGGAATCAATTGCTTTTCCAAAATGCAAAAAAAGGAATAGGCAGCACTTTTCACATTGAGAGAGAACAACTTTCCAAAGGATTTGTTGGAATAAGATAAGCCAACAACAACAAGCCAGACATGGTCGAATCATAAATGTTGGCTAAATCTGAGGATCTATACTACTTTTAGCCTAgacgttttttttttacattcctgTCTTGGACTTGACACTGGATGAAAGTTCACTGTCTGGGATAAGATCATAAACGGAAGTTAAGTGGAAATTGGACCAAAGTCACAACAAATTCAATCATCAGAATAGACCACAAACCTCTAGCTGTCTCCAGATCTATCAAGGCGGGCGGACCACTCCACCGAACCGGGGAGAATGACATCTCACCTGGGCAGACTGACACCACTGCTGTGGATCCTTTGGAGTTTCAtcgCTGTGGTGCAGGGGGACTTTGTGGAGCCCCCTCCCCCGTACTCCTTCGACTCCCTGGCTGAGGCTGAGACCCGGCTGCCCTGCCAGTTCAAGGTGGAAGTGGGCCAGGTGGTGGTTCAGGTCACCTGGACCAAGGAGAAAGCAGATGGCACCAAGGACCAGATCATCACAGTACACCACACCGACGGACACACAGagTTTGGTCAGTACTCAGGGCGTGTGCGGTTCAGCAGCAGGAAACCCACCGTGGACTCATCCCTGATCATCATGAACACCGTTGAGTCAGATGAGGGCAGGTACAACTGTCACATCAGCACCTTCCCCTCGGGGAACTTCGAACAACAGCTGTCACTCACCGTGTGGACCACGCCCATCTCCTCCCTGGACCCTGTGGTCCTTGTCGAAGGCCAGTCCTTCCAATTGGCTGCATCCTGCCGCTCTGTGGCCCGCCCTCCGCCCAACCTCTCCTGGGACACAGAACTACCAGGCCAATCACACAACAGGAGTTTGGAGGGTGGTTCAGTCTCCACCCACTTCTCTCTGCATCCCCTGAGGAGTATGGATGGGAAGAGGCTGGACTGTCTGGTGACGCACCCGGCTCTGAAGGAACCACGCAGGATCACCAACAACCTGGTGGTGCACTATCCTCCCAATGCAGAGATCTCTGGGTTTGATCAGAACTGGTATGCTGGTCTGGAGGAAGCTGCCCTCAGTTGTGTCAGTGGAGGAAACCCCAAACCACAGAGTTTCAATTGGACCAGAAAGGGCAGAGACTTACCAGAGGGCGTGACCACAGGGAATGGATCCTTGCTGTTTAATCGGCCCCTCGTCCTGACGGACGCTGGCATCTACCAATGTGTGGCCATGAACTCTGTGGGGGCGGATAACGCAGAGGTGGAGATCACTGTGACAGAGTTGCCTCAGAAGCAGGCGTCGTTCGACAGTCTCCTGATGGTAATAGTGGGAGGAGTGGCCGGAGTACTGCTTCTAGTCATGATCATCATAGTCATCTCTGTGACCCGTCACCACAAACGCAAGAACAAGAAACTGTCGAGGGAACTCACTGTGAGGAAGGAGGAGATCAGTACTCTCTCCAGACAGGCATCTTTCAGGAAAATGAACTCAGTCAGTATGGACACTAGAGGACAGACAGAGGAGGATATCCCTCTCAGAGTGGAGGGGACACTGCGGACCAGTCTGTCCTCCGTAGTGGAGCAAGGGCGCATTAGGGAGAGTCGATCTACTCTGGTAGGGGGCGGGGGGCTAGACTACCTGGGTCGACCTGTTCTGTACAATTCTTCacgaagagggagggagagcagagccatggacagagaggaggagaacagactTAGGGTGGAGTCAAATGAGCAGAACAGCACCATGTCtttgTCAAAccatctccacccccctctccaaccctctcccttccccatggaACAGTCCGTCGAGCTGCTGAGGTCCCTGACCGGCAGTGCCATCATCCCAACGGAGTGGGGTTTACATATACGACAGGGGCCCGGTAGCAGGAACACCCACTCCCCTCTCAGTTGCAACAACCCGCCCATCACAGACGACGAAGACGAGGATGAAGGTGTGGAGGGGGAGTGGGAAACGTGCCCGAGGATGAGTCCGTTGGATCAGGGGAGGTCAGAAGACCAGGACAGCAAGACCAACAGTTCTCAGATCTCAGAAGTAGAATGTGGACTCAACCCTCACTTCCAGCAGAACAATGGAACATTGAGACCCAAACCGCTCCCCAAATACCAGCCCAATGGCATCCTCCTCACCTCATCACCACACGCCTCCTTCATCCACAAGGCCCAGATTGTATAGGGCGGTAGGGCTGGGTAAGGGCCGGTGACATATTCTACGATGAGGCACACTTTGCTACACAACACCACTCTAACAGTGCTTTGTATGTGATTGGTTGTGACTGTTTGGGATACAAGGTCGTTGGTGGCATACCTCGGTGGCAGCCAGTTTACCTACTTTTCACTTCTGAAATATACCTCCACCTTCGCCTCAAGCGCTCAGACATTTATGATCAGCAAGTAAAGCTTCTTTCAAGAAAGACTCCTTGGCGTAGAGATACAAATATGTAACACATACATATCACAGGGGAGAAGCTGGACACGCGTGATGTCAAATTAAAAGCACATGAATGTCAGGTTGGACATAGACAGACCAAAGTAGTCTTTGTATCACAGCAATAATAATCCCTCCAGGCCCAGGAAGCATCCAACTGAGAGGAACTAAGAGACTGCCGTGCTTTATTATTGTAAAGCTTTTTTGCTACAACGACTTGGTGACAGGACTAAGGTGCAAGATTAGAATATCAACTACGCACCAATAGAGCCTGCCTAGTGGAATCCATGTTGGCGAACTTCCACCCTCCTTCCTTCTAGATGAGGATACATCCCGTAGTGTTCTGTTCACCCTAAGACGGAGTCCATCTTTTTGACTTGACGTGTGGGAGGAGTTTATCTGGAGAATACCCATCCTTGCCATGAAACGTGGGTGTGCACAAACTTTGAACTCGCTGTAGTCTAAGATGTCAAAAGCTGAAGACTGCATTTTAGACAAGAGGTTAAAAAAAAGCATCTGACACCTGAGCACAGTGAGAGCCTATGTGTAAATGTACTAGAAGTGGGAAAAAGTATTGTTCTTCTATTTTCTTACGCCACAGACAAGATAACTGCAATATGCCTTTGTTTGTATGAATACAGTAAAAATAGCCTTTGCTTTGTAGGCCAAAATAGTATTATGTTtgaatctactgtattataatgaCTTGAGTGCGGCCAaaatgacaccttattccctacataatgcactacttttgaccagagccctatgagccctgggcaaaagtagtgcactagatagggaataggatgcaatttCATGCTGTACATAAGTGTTTCTTTCATGCCATGTTCCTGGGAACATCTTACTGTATTTCACAGGTTTGTACACATATACTTGTaattcagtggaggctggtgggaggagctataggaggatgggttcattgtaatggctggaatggtatagatggaacggagtcaaacatgtggtttccatatgtgcAATGTGTTTCATACCGTTCCATCATTCCttttcagccattacaatgagccagtcctcctatagctcctcccatcagcctccactgctgtaatTGTATTTTATGCACAGGCTTCCATGTATGAAACgttggactcacacacacattcttctTTAGGAGAGCAGTGGTATCATTCCGTGGTTTTTAACTCTTTTCCTTTGTATAATACTGTAACGCTATCTCTAAGTGAATGTATTACCTacatgcactgagtgtacaaaacattatgaacacctgctctttccatgacagactgacaaggtaaatccaggtgaaagctgtgatcccttattgatgtcacttgttaatccacttcaattagtgtagatgaaggggaggagacaggttaaataagtatttttaagccttgagacaattgagacatggattgtgtttatgtgccattcagagggtgaatgggcaagacaaaatatttaagtgcctttaaactgggtatggtagtaggtgccaatgCGTACTGGTTTGTGTTAAGAACGGCAATgcggctgggtttttcacgctcaacagttttcaaTGTAagtagtccgggtggccatttaattaactgttcagaagtcttatggattgggggtagaagctgttaaagagccttttcgtcctagacttggcgttctggtaccgcttgccgtgcggtagcagagagaacagtctatgacttgggtgactggagtctttgaccatttttgggcCTTCCAATGACACCGCCTAGGTACTGGATGTCAGGAAGTTTGGCCACGGTaatgtactggaccgtacgcactaccctctgtagcgccttacggtcagatgacaagcagttgccataccagttggtgatgcaaccggtcaggatgcaaCCGGTCACTTTTCgaggatctggggacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU887739 lncRNA upstream 59996 19765207 ~ 19765716 (+) True G779138
TU887738 lncRNA upstream 61572 19763928 ~ 19764140 (+) True G779137
TU887684 lncRNA upstream 118765 19636308 ~ 19706947 (+) True G779083
TU887652 lncRNA upstream 230299 19595188 ~ 19595413 (+) True G779052
TU887563 lncRNA upstream 269832 19545071 ~ 19555880 (+) True G778967
TU887788 lncRNA downstream 8954 19862674 ~ 19870992 (+) True G779183
TU887792 lncRNA downstream 11194 19864914 ~ 19872043 (+) False G779184
TU887793 lncRNA downstream 11194 19864914 ~ 19872043 (+) True G779184
TU887799 lncRNA downstream 20767 19874487 ~ 19874811 (+) True G779189
TU887822 lncRNA downstream 62671 19916391 ~ 19918384 (+) False G779212
XM_021615013.2 mRNA upstream 1173 19817663 ~ 19824539 (+) False LOC110531694
XM_021615014.2 mRNA upstream 1173 19817668 ~ 19824539 (+) False LOC110531694
LOC110532967 mRNA upstream 8309 19807717 ~ 19817403 (+) True LOC110532967
XM_036987525.1 mRNA upstream 18870 19771166 ~ 19806842 (+) False LOC110531692
XM_036987526.1 mRNA upstream 18870 19771168 ~ 19806842 (+) True LOC110531692
XM_021615017.2 mRNA downstream 22501 19876221 ~ 19914138 (+) False LOC110531697
XM_021615018.2 mRNA downstream 22501 19876221 ~ 19914138 (+) False LOC110531697
XM_021615019.2 mRNA downstream 22501 19876221 ~ 19914138 (+) False LOC110531697
XM_021615020.2 mRNA downstream 22501 19876221 ~ 19914138 (+) False LOC110531697
XM_021615023.2 mRNA downstream 22501 19876221 ~ 19914138 (+) False LOC110531697
TU887666 other upstream 1106 19817688 ~ 19824606 (+) False LOC110531694
TU887667 other upstream 1106 19817688 ~ 19824606 (+) True LOC110531694
TU885868 other upstream 1168138 18656331 ~ 18657574 (+) True LOC110531664
TU885818 other upstream 1325694 18499614 ~ 18500018 (+) True G777396
TU885567 other upstream 1717230 18108019 ~ 18108482 (+) True G777165
TU887801 other downstream 22548 19876268 ~ 19892447 (+) True LOC110531697
TU887900 other downstream 155796 20009516 ~ 20022036 (+) False LOC110531703
TU887902 other downstream 155796 20009516 ~ 20023468 (+) False LOC110531703
TU887922 other downstream 185891 20039611 ~ 20040283 (+) True G779291
TU887946 other downstream 225716 20079436 ~ 20082054 (+) True LOC110531706

Expression Profile