RNA id: XM_021615024.2


Basic Information

Item Value
RNA id XM_021615024.2
length 6793
RNA type mRNA
GC content 0.54
exon number 30
gene id LOC110531697
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 19876221 ~ 19914138 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATATTGTCGCAAACCCGTGTGTCGCGAAGCAAGCCGCCCGTGTGAAGATGGCGGCTGAGCTGCACCCGTGTAGCGGAAAGCTAATCGGACTGTCGAATTCGAACCGAACCGCTCAGCGGAACCAACCAGTCCAGGAGTTTAACCACGGGTTGGTTCTAAGCAGAGAGCCGCTGAAAGACCGTGATGTATTCACCGTCCGTATTGACAAGAAGGTGAACTCTTGGAGCGGCTCCATAGAGATCGGGGTGACTTCTCTGGACCCGGCTGGTCTCGACTTCCCCAGCAGCGCTACGGGTCTGAAGGGAGGCTCCTGGATCGTGTCTGGCTGCTCGGTGCTACGTGACGGTCGCTCCGTCCTTGAGGAGTACGGCCGAGACCTGGACCAGCTGTCTGAGGGCGACCGTGTGGGCAtacagcGGAGCACCCATGGCGAGCTCCACCTGTGGGTGAACGGGCAGGACTGTGGCGCGGCTGCCAGTGGTCTCCCGACGGGCCTCTGGGCGGTGGTGGACCTCTATGGCAAGTGTACGCAAGTGACTGTGGTGAGCTGCGAGCCGCCGTCCTTGGcggagagagacactgagagggAGACGGTGGAGGAGCGTGAGCAGGaagacgaggaggaagaggtggtggtGTGCGGGGTCAGGGAGGGGGAGTTCGGGGGTCTGACGTCAGCGGTGAACCTGGCGGCGGTGACAAACGGGACATTAGAGGAAGTGCCTGAGCTCCCTCCTACTCATAACCGACCTGACAAGTTTCCCAACAACCTTGAGCCTGAGACAGTTCTGACGGAGCACCAGCTCTTTGACGTGTTAAACAATGCCATTGTATCCCTTTACCGCTCTGAGGACAATGGAGGGGGAGATCTGGGAGGAGGTGGAATAGGGAGAGACTCAGGAACAGGAagtagaggggacagggggaGCAGCAGCGGTGGGGGATCCGTTAACGGTAACAGTAGTGACAGCGGGGGCGGGACCGGCAATACTGGAAGCATCAACAGCCCTGCAGGTGGCGGAGGGGCGAGACTCGGGGCAGTGACGGGCGGGATGCTGACCAATGATGCGCTGCTGTTCCACGAGAAGTGCGGCACACTGATCAAGCtgagcaacaacaacaagacGGCGGAGAGGCGGCGGCCTCTGGACGAGTTCAACAACGGCGTGGTCATGACCAACCGGCCGCTTCGACACAACGAGATGTTTGAGATCCGCATAGATAAGCTGGTGGACAAGTGGTCGGGGTCGATCGAGATCGGCGTGACAACACACAACCCCAACAACTTGGACTACCCAGCCACAATGACAAATCTGCGCTCAGGTACAATCATGATGAGTGGCTGTGGGATCCTGACGAATGGCAAGGGAACACGTCGGGAGTACTGTGAATTCAGCCTGGATGAACTGCagGAGGGGGATCACATAGGCTTGATGCACAAGGCCAGCGGAGCTCTTCACTTCTACATCAATGGCATCGACCAAGGCGTGGCAGCGGCCCAGACGCCCGCCGTAGTCTACGCCGTGGTCGACCTCTACGGCATGGCTGTCAAGGTGACCATCGTCCACAATCACAACCACAGCGACCGCCTCCGCCGCAACAACGCCATCATGCGGGCGCTGTCGCCAGACGTTGGGCGCCCCCGGCCTGCCCACTCCCTCACGCCGGACCCCGACACTCCCGACcgcctcctctttcactccaactGTGGCCAAAAGGCAGCCATCATCAGCGAGGGCAGGACGGCTCTTCGCCCTCATGCTACGGACGACTTCAATCACGGCGTGGTCTTGAGCGGCCGCCCGCTGCACTCCAACGAGGTGTTCCAGGTGCGCATCGACAAGATGGTGGACAAGTGGGCGGGCTCCATCGAGATCGGCGTGACCACGCACAACCCCGCCTACCTGCAGCTGCCCTCCACCATGACCAACCTGCGCTCAGGTAATACCAACCAATCAGGGACTTGGATGATGACAGGAAACGGGGTGATGCACAACGGAACCACCATACTGGACGAGTACGGACACAACCTGGACCGACTCAAAGCGGGGGACACAGTGGGCGTGGTGCGGAAGGAGGACGGGAGCCTCCACTTCTTTGTGAACGGGGTGGCACAGGGCCCGGCGGCGTGGAACGTCCCACCCAGCGTCTACGCCGTGGTGGACCTCTATGGCCAGGCCGCACAGGCAACCATCATGGACGACGTGGCagacctcccccctctccccgaGGACAGCTCGGAGGGCCCCACCGTCATGTCGCCCGGCAGCCCATGCTCGGTCGCCGGGGGCAACAGTGCCAACGACCTGCGCTTCCACCAGCTGCACGGCACTAACGCGGTAATCACCAATGGGGGGCGCACTGCCCTCAGACAGAACTGTCGATCCGAGTTCAACGACGCCATCGTCATCTCTAACAGGTGCCTTCGAGACGGAGAGCTCTTTGAGATAGTCATTCAGAAGATGGTGGACCGGTGGTCGGGGTCAATAGAAGCAGGTAAGATAATGGCAGgTGTGACTGCTATCAGGCCAGAAGAGCTGGAGTTTCCCAACACCATGACGGATATAGACTACGATACCTGGATGCTTAGTGGCACGGCCATCATGCAGGACGGCAACACCATGCGTAACAACTATGGCTGTGACCTGGACACTCTGACCACGGGCAGTAGGATCGGCATGATGCGCTCGGCCACCGGCGACCTTCACTACTACATCAACGGTGTGGACCAGGGGGTGGCCTGCACCGGGCTGCCGCCAGGTAAAGAGGTGTATGCGGTGATAGACCTGTATGGTCAGTGTGTCCAGGTGTCCATCACCAGTTCCTCTGGCCCTCAGGATAACAGTCTGTGTACCAGCAACATCACAGAGAAGAGTTTCCCCATACACTCCCCAGTGGCAGGCGTGGCCCACCGGCTCCACAGTAAGCATGGTAAGAACGTGGTTCTACTGGGAGAGGGCTGCCAGGCCGTCAGGGTGGGAGGATACGCACACGGCATCGTCTTCAGCGCCAAGGAACTCAAAACAGACGAACTGTTTGAGgtgaaGATAGACGAGGTGGATGACCAGTGGTCTGGTTCCCTCCACATGGGTCTGACCACCCTAGCCCCTCCAGAGCTGCCCTCCTGCCCCATGTCAGGCCTGTCCCCCTCCCTCACACAGCTCCGGTCCAAGGTCACCTGGCTGGTAGCCGGGTCAGAGGTCAGACGCAACGGGCTCCTGCAGAGACAGAACTACGGCGCCTCCCTGGACAGACTGACGGTGGGTAACCGCGTCGGGGTGAAGAGATGCAGCGATGACACCATGCACGTCCTTATCGACGGAGAGGACATGGGACCAGCTGCCACCGCTGTGGCCAAGAACGTGTATGCAGTGTTGGACCTGTATGGTCGTGTGACAGCGGTGTCCATCGTCAGTTCGTCGGTGCTGGAGGACGCAGGGAGCGTCAaggccccctccctctcctcagacAGCTGtagcgaaggagaggaggaccgtACGCCGGTTGAGGGTGGTGAGCTGGCCCTGGTGCCCAACACAGTCATGGCCTTCCTGGAGAACCATGGGAAGAACATCCAGCTGTCCCATGAGAACCTGACGGCGGCCCGCGTCTCCAGCTACAACCAGGGCCTCCTAGTCACAGCACAACCCCTGCCCCGACAACAACTGTTCCAGTTTCAGATCGACCGCCTGAACGCATCGTGGACGTCGTCCCTGTCGCTAGGGGTGATCGGCCACTCCCCAGACCGCCTCAACTTTCCCTCCACTGCGTGCTGTCTGAAACGCTCTGTGTGGCTGCTGCAGAGAGACTCTGTCTTCCACAACTCACTGAAGATCTGTGAGAACTATGGTCCTAACCTGGACACATGTCCAGAGGGTACAGTCCTGGGTCTGCTGGTGGATGGGAACAGCTGTCTGCACCTTTATGTGAACGGTATGGACCAGGGAGTAGCAGCCCAGGATATCCCTACGCCATGCTACCCCCTCATAGACCTATACGGACAGTGTGAACAGGTTACCATAGTGACCAACAACGTGGCGACCGTGGGAGGCGAGAGCGTCAAGGCGCGTTGCCAGGGCGACATGGAGAAAGCGGACATGGTtgatgGGATCAAAGAGAGTGTTTGCTGGATGCCCCATGCAGAGGTCAACCCCAACAAGACCTGTGAGTACCAGGCCCTGTGCTCGCGCTTCAAGGACCTGCTGACACTgccagATGGTTACTTCAACGAGGATGCCAAGTATAACCTGTGTTACTGTGAGTCGTGCCACAAGCTGCGGGGGGACGAGTCCTACTACAAGAGAGGGGAGCCCCCACGGGACTACGCCCTGCCCTTTGGCTGGTGCCGCTTCGCTCTGAGGATCAAGCCCCACTGTGATGTGTCCAATTCGTTTAAGCAGTGGCACATAGCCTACCACGGCACCAGCGTAGGGGCCCTCAGACGCACACTGGACCATGCCCAGCTACTCTCTGGGACGTCGTCCATCTTCTCTGTGTCTCCGGTGAAGACGGAGGGTCCTAACGGCTACAGTGAGCCAGAGGAGAACAGCAGCAACAGCCTCCCTGACAGGGACAGGGAAACGGACAGGGAGGTGCCCCGGGTTCAGCTGTCCCCCACCATGCGCTACTCCGGCCTGGAGATGTTCGCCCCCAAAGTGCAatTCCGGGACCCCCGTTCTCACTGCTGTCACCAGGCCCAGGTGGGTTTCCAGGTGTGTGTCCGGCCGGGCTCCTATAAGGTGGGTCCCCAGACCCTGGGAGCCATCGAACCCCTGGATCCCCGCTTCAGCAACACAGAGATCGAGTGGATCACCAAGGATCAGGGGGGCACCCTCCTCTACGGCCTGCTCATACGGGTGGAATGATAGCAGGAGTAGTGAAGAGATtgttggatggagagagagggggggaaagggaGCTACTCTCTCCCAGCAGTGCCTCAAACTACTGCTTCTCCATCAACCAAATTACAGACTTTGGGAGTCTTTGGAATTAGGGAATTTCCCTCCTGTTGCTGGGCGGTTTGTTGATTGACAATTCAGTTTTGTTTGTTTAggacttgtttttttttctgaCACTTAACAGGGAGGGACTAGGGTGGATTCAGAGAAGAACAACCAGACAGACACTGCCTGCACTTTGTTTTGGACACTTCGTGGgcgatttttatttttaaaattttaacatgtattttacattttttttattcgtCATAATACAACACTTGTTTTTTGTCACAGACATTTTTATTTTAGCGCAGTTTTGTCTTCCCGGTCTCTGTTCCCTCCCTCACTCTAGCTTGTTTTTTTTATCAACCCCTTTACCCCATTCCAAGACCTGGACCGTTTGTTGAACCACCTCGCAACGTCGCCGCCACACGGTCACTGGCTATTGGATTATTATTTTTAAGCGAAAGACTTAACCGCAGGTCAGAAGGACAATAGAGATGGACACTAACACCACCGTCAGAACTAGTGGGAGAgaaatttttaaatgttttttcaaCCGGCCAGTCTGGCCGCTAAGCTTCGTCTCCCAAATTCTCCCCCATCACTGCTTTACCCCGTGTCATATTCACTTCACTGGAGATTAGAGGGATTCTACACATGCTTTGTAGAGGGAATACCAGGGGTGTGTTCAGCAGGGAGAATCATTTTTGAAAGGAGAGGTTCTACCGGCGCTTGTCCAATGCACAGTCCTGTTGCAAAAAGTCATTCTTacagtgtgccctactgaacatgaccttGATGCATAAAGACCAAGGCTGATTCCATTTCAACTAGTGATCGAAATGGGCCCGGACCTGAAgatctctcctcattctctcatTTTCTATAGCTAGTTCAGGAGGAAAACGTTGTGGattgttgcagatagaaatgtcatgaaTGGAGTTGACAGGATTCTATAccagagaggcatgtttgttctaaaGGTATTTCTACCTGAACTTTCCACAACGTTGTGCACTGCTGAACATGCCCATTTTCTCACATTGTTTACACTGGTTACGTTTAAGTCTCCCTCTATGATCCATCCATTCTGTCATCGTTTACCAGGGAGGAATGTTCAGAGCCAATCACATCATAGGGGTGTGGCTTCACACTGGCGTGTTCATGCAAAGACTCTTGGTAAATGGAGTCTTTTTTTACGAAATGCAGGCCCTGATGCTGGAGTTTACATTGCGAATGTGATTCATTagggtttttgttgttttttgtagtCCGTTTACGTTCTACCTGTCTGCTTCATGTTAAAACAAACTCCCTCTATTTTACATAATAATTACATAGATTAACACAGGGGTTCATTAATTCCTGATTAAAATATtcagcattttttttttgtatgtgGACAGCTCTTCAAAGCATATCTTTTAACCATTCTGTTTTGTTTGGCAACAAAATAATCTTAGATACTTACGTATTACATACATCACTACATGCATAAATAACCCCGCCATCTTGCCAAGTCATTGTTTTGACAAAAAAGGTGAGGAAAACAGTGGTATCGAGTCAAGATTCAAGGTTGTCGACTTTCCTCACACAAAACTGTGTGTAAACTAACTTATTGCAAACGTGGGGTTTGAAAAAATGTACTTGCAACGTTCAatcaaaatgtgaaaaatatatGGGGTTGTTTAAAAGCCCAGTGCTGCTTTTTACGAGAATGAATTTGTATTCTTTTTTCCCCTTTTTTGTTCTGTATGTTGCATTGTACAGGCTGTTACATAACATCATCTTCttgatttgtaaaaaataaataaaaaatgaataaacCAATAGACAGTGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU887799 lncRNA upstream 1411 19874487 ~ 19874811 (+) True G779189
TU887792 lncRNA upstream 4179 19864914 ~ 19872043 (+) False G779184
TU887793 lncRNA upstream 4179 19864914 ~ 19872043 (+) True G779184
TU887788 lncRNA upstream 5230 19862674 ~ 19870992 (+) True G779183
TU887771 lncRNA upstream 25868 19849601 ~ 19850354 (+) True LOC110531693
TU887822 lncRNA downstream 2253 19916391 ~ 19918384 (+) False G779212
TU887823 lncRNA downstream 2253 19916391 ~ 19918384 (+) True G779212
TU887852 lncRNA downstream 34023 19948161 ~ 19948382 (+) True G779227
TU887893 lncRNA downstream 87615 20001753 ~ 20002034 (+) True G779266
TU887897 lncRNA downstream 90410 20004548 ~ 20004785 (+) True G779270
XM_036987527.1 mRNA upstream 22502 19825712 ~ 19853720 (+) False LOC110531693
XM_036987528.1 mRNA upstream 22502 19825712 ~ 19853720 (+) False LOC110531693
XM_021615013.2 mRNA upstream 51683 19817663 ~ 19824539 (+) False LOC110531694
XM_021615014.2 mRNA upstream 51683 19817668 ~ 19824539 (+) False LOC110531694
LOC110532967 mRNA upstream 58819 19807717 ~ 19817403 (+) True LOC110532967
XM_021615027.2 mRNA downstream 6185 19920323 ~ 19939202 (+) True LOC110531699
XR_005053202.1 mRNA downstream 28537 19942675 ~ 19946522 (+) True LOC110533004
XM_036987531.1 mRNA downstream 95045 20009183 ~ 20020429 (+) False LOC110531703
XM_021615037.2 mRNA downstream 165244 20079382 ~ 20082084 (+) False LOC110531706
XM_036987533.1 mRNA downstream 165275 20079413 ~ 20082084 (+) False LOC110531706
TU887666 other upstream 51616 19817688 ~ 19824606 (+) False LOC110531694
TU887667 other upstream 51616 19817688 ~ 19824606 (+) True LOC110531694
TU885868 other upstream 1218648 18656331 ~ 18657574 (+) True LOC110531664
TU885818 other upstream 1376204 18499614 ~ 18500018 (+) True G777396
TU885567 other upstream 1767740 18108019 ~ 18108482 (+) True G777165
TU887900 other downstream 95378 20009516 ~ 20022036 (+) False LOC110531703
TU887902 other downstream 95378 20009516 ~ 20023468 (+) False LOC110531703
TU887922 other downstream 125473 20039611 ~ 20040283 (+) True G779291
TU887946 other downstream 165298 20079436 ~ 20082054 (+) True LOC110531706
TU888672 other downstream 1187441 21101579 ~ 21102271 (+) True G779964

Expression Profile