RNA id: XM_021615037.2



Basic Information


Item Value
RNA id XM_021615037.2
length 1139
RNA type mRNA
GC content 0.45
exon number 3
gene id LOC110531706
representative False

Chromosome Information


Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 20079382 ~ 20082084 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TACCCACAATGCATCGTATTCCCTAACGAATTTCCGGCTGTACAACAGTGAAATAATTCCTCAAGAAAAATACGATCAAGAAAGGGTGGAATGGCAACAATGATTGAAGAAAATGGTCCATCAACTCATGGGCGGGGCGAACTGTCATCTTACTCCTCCAGAGCACGGCAGAAGCTGGAGAGCCTGCTGAACAAAAACATGAGAATCAGAATGACAGATGGACGAACACTGGTGGGACTGTTCCTGTGCACAGACAGAGACTGCAACGTCATCCTGGGGTCCGCTCAGGAGTTCCTCAAATCCTCAGACTCCTTCTCCCAGGGTGAGCCCAGAGTGCTGGGGTTAGCCATGATTCCTGGCCACCACGTGGTCTCTATCGAGGTGGAATCAGACAGCCTGGTCGGAACACAGGGGTTCGGGTCCAGCCACTGAGGAACAAGATCAGCTCGCCCAAAGCTGGAGGAGACTAGCTAACACCCTGGCTAGCCAGGTCTATGTCTCAGCAGCCTAGAAGACGTTACAGTACAGACTTGAAATTGAGAATTCAAACAAAGGAGAATTCCAGATGCAGCTGATCTCTGGTGCCAGTGTATTTGGTTTAGCAGGCAGCCATGGTGTGTGTGAGGTCTAACCAGGCACTCTCAGTgacattacagtgtgtgtgtgtgtgttaagttaATATACTGAGTACAACATGTTTATTCAAGGAGGGGCATGGACTGAGCCAggctgtacagtatatgtgtttgTATGGAACCGCTGTTTAATTGTATGGAATATGGATAAATGTTTTCCAATACATTTCAGTATCTAAACCTGTCTGATCTGTTAATGAAGAATGATGCAGACTGTCCTTATATACTGGTAGTGCAGCAGTTACAGATGGTCCAGAGCATGACTAGCTAAAGTTCATGACTTACCTGACTTAAacacctcaactagcctgtacccctgcacactgactcagtactggtgccccctgtatatagcatcgttattcttgttactttttattttagcctacttggtaaatattttcttcttgaactgcactgttggttaagggcttgtaagcatttcacagtaaagtctacgcttgtatttggtgcatgtggaaaataaagtttgatttgattaaa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU887938 lncRNA upstream 16671 20062155 ~ 20062711 (+) True G779306
TU887897 lncRNA upstream 74597 20004548 ~ 20004785 (+) True G779270
TU887893 lncRNA upstream 77348 20001753 ~ 20002034 (+) True G779266
TU887852 lncRNA upstream 131000 19948161 ~ 19948382 (+) True G779227
TU887822 lncRNA upstream 160998 19916391 ~ 19918384 (+) False G779212
TU887903 lncRNA downstream 5093 20087177 ~ 20088195 (+) True G779274
TU887966 lncRNA downstream 22678 20104762 ~ 20105081 (+) True G779334
TU887967 lncRNA downstream 23307 20105391 ~ 20105755 (+) True G779335
TU887968 lncRNA downstream 24023 20106107 ~ 20108010 (+) True G779336
TU887971 lncRNA downstream 28623 20110707 ~ 20110927 (+) True G779339
XM_036987531.1 mRNA upstream 58953 20009183 ~ 20020429 (+) False LOC110531703
XR_005053202.1 mRNA upstream 132860 19942675 ~ 19946522 (+) True LOC110533004
XM_021615027.2 mRNA upstream 140180 19920323 ~ 19939202 (+) True LOC110531699
XM_021615024.2 mRNA upstream 165244 19876222 ~ 19914138 (+) False LOC110531697
LOC110532969 mRNA downstream 84511 20166595 ~ 20173950 (+) True LOC110532969
XM_036987537.1 mRNA downstream 104643 20186727 ~ 20211238 (+) False LOC110531712
XM_036987538.1 mRNA downstream 107746 20189830 ~ 20211238 (+) False LOC110531712
XM_036987541.1 mRNA downstream 157673 20239757 ~ 20247172 (+) True LOC110532972
XM_021615047.2 mRNA downstream 197990 20280074 ~ 20282985 (+) True LOC110531716
TU887922 other upstream 39099 20039611 ~ 20040283 (+) True G779291
TU887902 other upstream 55914 20009516 ~ 20023468 (+) False LOC110531703
TU887900 other upstream 57346 20009516 ~ 20022036 (+) False LOC110531703
TU887801 other upstream 186935 19876268 ~ 19892447 (+) True LOC110531697
TU887666 other upstream 254776 19817688 ~ 19824606 (+) False LOC110531694
TU888672 other downstream 1019495 21101579 ~ 21102271 (+) True G779964
TU892294 other downstream 2961923 23044007 ~ 23047045 (+) False G783405
TU892315 other downstream 3023387 23105471 ~ 23108039 (+) True gba3
TU893055 other downstream 3683621 23765705 ~ 23779501 (+) True LOC110531760
TU893030 other downstream 3720502 23802586 ~ 23804137 (+) True LOC110531761

Expression Profile